Gene PSPTO_0927 details

Gene Information

• Locus tag: PSPTO_0927
• ID: 1182556
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 1007206
• End bp: 1007634
• Gene Length: 429 bp
• Protein Length: 142 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637392304
• Product: type IV pilus biogenesis protein
• Protein accession: NP_790766
• Protein GI: 28868147
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4968] Tfp pilus assembly protein PilE
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATGCAC AAAAAGGTTT TACACTGATT GAACTGATGA TCGTAGTTGC GATTGTTGGT 
ATCTTGGCGG CGGTAGCGAT TCCGTCATAT CAGAACTACG CAAAAAAAGC TGCGTATACC 
GAGGTTCTGG CTGCAATGGC CTCCGTCAAA ACTGCTGTGG GTGTGTGCGC TGCTCAACAA 
GGTACCGTTG CTGACTGTGA CACTGCAGCT AAAGTAGGTG TAACATTGCC TTCAGGTGCT 
ACTACCGGAG CAGTCAATAA GATGGAAATA ACTGCCACCA GCGCTGCTAT TACTGCTACT 
CCGAACGCAT TTAAAGGTAT CCTGACTACC GATACCTGTA GTCTAACGCC TGCTATAGCA 
GCTGCTGGAT CTCCGGTAAC TTGGAGCTAC ACAGGTGCAT GTGTAACCAA TGGCTATGTT 
AAAAACTAA 

 

Protein sequence

MNAQKGFTLI ELMIVVAIVG ILAAVAIPSY QNYAKKAAYT EVLAAMASVK TAVGVCAAQQ 
GTVADCDTAA KVGVTLPSGA TTGAVNKMEI TATSAAITAT PNAFKGILTT DTCSLTPAIA 
AAGSPVTWSY TGACVTNGYV KN