Gene PSPTO_0876 details

Gene Information

• Locus tag: PSPTO_0876
• Symbol: hopD1
• ID: 1182505
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 946222
• End bp: 948339
• Gene Length: 2118 bp
• Protein Length: 705 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 637392252
• Product: type III effector HopD1
• Protein accession: NP_790715
• Protein GI: 28868096

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCCTC TACGATCTAT TCAACACAAC ATTGCAACTC CCCCAATCAG TGGCGGTCAG 
CCATTAGACG CGGTGGGCCC TCAGGCCCAG CAATCCCATC CTAAAAGGAT TTCACCTTCT 
CAATTGAGCC AAAGCGCTCA CCAGGCTCTA GAACGCCTTT CAGCTAATGC CGAACACCAA 
CGCCTTGCAT CACTGGTACG CAACGCTCTG CAGGATGGCA CATTTCAATT TCAATCCAGT 
AACCACACGC AAGTAACCTA TAAAGCGTCA ATCTGTCTGC CAGCTGACAC CGATACCGTG 
AGAACCGACC ACTTGATTAA TAACGAGCTG ACGGTTCAGG CCCGATTAAA TGATCAATCG 
GAGTACGACA TCGTCAGCGC ACATTTGCAT GGCTCTTCGA AAGCCATATC CTTCGACGTA 
CCCAGCCCCC CGCCCGCACA TGGTTCAGCA TCTTCTGTCT TGAGTGAACG GACCCATCTA 
GGTATGAGTC GCGTTCTCTC ACAAGATGCA GTAGACAGCA GTAGCCTGGA AACTCCGTTA 
CTGAGCTCGC CAGACCATTC TCGTCCGCCA TCACAGCCAA AGCCCGTGCA TATCGGGTCG 
GTCCGCAGGG ACTCTGGTAG CCTTGTTTCC GATAACCCGG TAGTGCAGGC CCTGCTATCG 
TTTGCGCAGG CCGACCAGGC ATTTCCACCA CAGGCCGCGA GCATTGCCGG GGTCCAGCTG 
GAAATGCGGC CACGTCGGGA TATTGAGAAA GCACTTGAGG AATTCAAAGG CGCCTTCACG 
GTGGTGAAGG CGCAACTGAT GTCCGGTGCC AACTCGTCGG AGCGTGTAGA TGAGGATGTC 
AACGCAGACA TCCATATCCC CTTATTGCTC AAGGCCATCG AGCGGGGGGC TGCGGCATTT 
GGTCCAAACG CATCAATCGG CCAGAATAGC GCGAAAGCGT TTCTCGCCTC ATGTGCTCCC 
AAGATCACGT CCAATGACGA TGTCCTCTCC GAGTTCATCA ACCAGAAACT CAAGGGGGAC 
GACGATCTTC AGGTTCGCCT GGGCGCACAG GAATTGTTGC ATGTAGCCAC CAAGAAGGAA 
TTCCAGCTCG GCGGTCTAGC CGGCAGCATC GGGGTCAGCA GCATACTCGG CTCGGCATGG 
GAGCTTGGCG CTTCTGAGCT GTTGAAAAAT GCCATCTTCG GCAAAAATTT CTCACCGAGC 
CAATATGCCC TGCAATTGGC TGGAATCGAT TCAGTGCCTC CTTTGATTAT CGAGTCCATG 
GACACCATGT GCGTACTTGC CATCATCAAG GGCATGAAGG GTGAGGAGTG GTCCATGAGC 
GATCTACTTC CCAAGGCGTT GAAGGCCGGT GCTATTTCCT CGGTGGTGTC ATTCCCCAAT 
AATGTTTTGC AGTATGCAGG TTTCAAATCC AGAGTCGGCG ATCTTGCGGC AAACTCAGTG 
ACAACTGAAG CGGCCATCTT TGGCGCCGCC TCCGGTATTC CACCCGAGGT CAAGGAAAGT 
GAAGAGCTGA TGCGTGCTGG CTTATTCCAG AGCATGAAGG ACGGCGTGAT GGCTCATTCA 
GGCGAGGGGG TGGACACCAA AAAAACGATT GAGCGGATGA CGCGCCATGC GCTGGATATC 
GCTCCGGGCG AAAGCACCGC TGTCAAGTCC ATGGGGCTGG CATCGATTGT CGGGATGATT 
CCACTGATTG CCAGCAACAA GGCAACCGGG CTGCTGTCGG AACAGGTACT GCGTATTTTC 
CGGAGCGCCG TCTTCAATCC AATCGAAGCC ATCGCTCTGA ACGCGTTGGC GCTTGGCGGG 
CGTGTCAACG TTCCCGGGCT ATTTGATTCC GACAATGCCA AGCATGCACG CGTGGTACAA 
ACCATCCTTG CGCGGGCCAG CCAGCACATG GAAGCTGGAG ACCGTGACAT TTCCGCAGAG 
GAGCTACATC AAATGCTGGC TCCCCGGAGC GAGTTCCTGC GCCATGTGGG ATCTGCGATT 
GTCAACGGCA TGAATGCCAG CTTTGAGGCA ATTCCCGCCC TGGTTCGGAA GCTTGGATAT 
GGTGAGGCTC CATTGGCCGA ACGTATTCCG TATCAAGACC TGGCTGTGCC CGACACGTCG 
CGGCAGCCCG CACCCTGA 

 

Protein sequence

MNPLRSIQHN IATPPISGGQ PLDAVGPQAQ QSHPKRISPS QLSQSAHQAL ERLSANAEHQ 
RLASLVRNAL QDGTFQFQSS NHTQVTYKAS ICLPADTDTV RTDHLINNEL TVQARLNDQS 
EYDIVSAHLH GSSKAISFDV PSPPPAHGSA SSVLSERTHL GMSRVLSQDA VDSSSLETPL 
LSSPDHSRPP SQPKPVHIGS VRRDSGSLVS DNPVVQALLS FAQADQAFPP QAASIAGVQL 
EMRPRRDIEK ALEEFKGAFT VVKAQLMSGA NSSERVDEDV NADIHIPLLL KAIERGAAAF 
GPNASIGQNS AKAFLASCAP KITSNDDVLS EFINQKLKGD DDLQVRLGAQ ELLHVATKKE 
FQLGGLAGSI GVSSILGSAW ELGASELLKN AIFGKNFSPS QYALQLAGID SVPPLIIESM 
DTMCVLAIIK GMKGEEWSMS DLLPKALKAG AISSVVSFPN NVLQYAGFKS RVGDLAANSV 
TTEAAIFGAA SGIPPEVKES EELMRAGLFQ SMKDGVMAHS GEGVDTKKTI ERMTRHALDI 
APGESTAVKS MGLASIVGMI PLIASNKATG LLSEQVLRIF RSAVFNPIEA IALNALALGG 
RVNVPGLFDS DNAKHARVVQ TILARASQHM EAGDRDISAE ELHQMLAPRS EFLRHVGSAI 
VNGMNASFEA IPALVRKLGY GEAPLAERIP YQDLAVPDTS RQPAP