| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0859 |
|---|
| Symbol | |
|---|
| ID | 1182488 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 929071 |
|---|
| End bp | 931740 |
|---|
| Gene Length | 2670 bp |
|---|
| Protein Length | 889 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637392237 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_790699 |
|---|
| Protein GI | 28868080 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTCG AGGACGGCAA GTCACTGGCA GCATTCTATG AACTCACCCC CATCGGCACC
GAAGGTCGGG ATCCTGAGTG GTTACGCAAA GCGCGCGATG CTCTCGAAAA TGCGCTGCAG
GACAGTTTTG ACGAACTGGA TGAATCGCCT TGGGTGGTGC AGTTCTACGC CAGGGATGAA
ACCAGTTGGG CAGATTATCT GGAGACGTTG CATGATTACG TCCAGCCTCG CGCTCAGGGT
ACGGCGTTTA CAGAAATGTA CCTGCAGCAA TTCAAACATC ACCTAGAGGC AATCTCCAAG
CCGGGAGGTT TATTTGAAGA CACCAAAGTG TCTCAACTGC CCTGGCGCGG ACAGCAACGC
AGGGTTCGCA TGGTCGTCTA CCGGCGCTGC ACCGGCGATG GACTGGTTCG TGGCCAGACG
CCGTCGATGT ACTTGAAAAA CATTTGCGAG CGTCTGACGG GAGGACTGGC CAACGCGGGC
ATCAAAACCC GGCGCATGGA TCGCCATGAC ATTCGTCACT GGCTGTTGCA CTGGTTCAAC
CCGCATCCCG AACACTTGGG ATCAAAGCGC CAGGACATCG ATCGTTTCTT CGAAATCGTC
AATAACCGCA AGGTCGAACC ACCAGAAGAG GGCACGCTGC CGCTGGCCAG CGGCGATGAT
TTCTCTCAGT GCCTGTTTTA CAGCGAACCG CAATCGGATG CCAAGAAAGG TCTCTGGTAC
TTCGACTCGC GCCCTCATCG GGTCATCGTC CTCGATCGCT TACGCGATGC GCCAAAGACC
GGGCACCTGA CGGGTGAAAA CCGTAAAGGC GGGGACGCGC TGCATGCCTT GTTCGACAAG
TTGCCCGAAG ACACGGTACT CAACATCACG CTGGTGATCA CTCCCCAGGA TGTTCTGGAG
GCCCACCTGG AAAAACTGGC ACGTAAATCA GTCGGTGACA ATCAAGCCTC CGCCCTGACC
CGTGAAGCGG TCGACGAAGC CCGGAAACTG ATCGGTCGAA AACACAAGCT GTACCGGGGC
AACGTGGTTT TTTACTTGAC CGGCAAGGAT GAGCAACAAC TGGAAAGTCG GAGCATGGAG
CTTGCCAATG CCATGCTTAG CGCCGGTATG GAACCTGTCT ATCCTCGTGA TGAAGTCGCC
CCTCTCAGCA GTTACCTGCG GTGGCTGCCC GCCAGTTTTG ATGTGAACAA GAAACATGCT
TTGGACTGGT ACACGCAGAT GATGCTCGCC CAGCATGTCG CGAACCTTTC GCCAGTATGG
GGGCGTGCCA GCGGCACGGG CAACCCCGGC ATAACCCTGT TCAACAGGGG CGGTGCACCG
CTGACGTTCG ACCCATTCAA CAAGCTTGAT CGGCAGATGA ATGCCCATCT GCTCCTGTTT
GGCCCGACAG GTTCAGGTAA GTCAGCCACG GCCAACAATT TGCTGATGCA GTTAATCGCC
ATTTACAGGC CGCGCCTGTT CATCATTGAA GCCGGTAATA GTTTCGGCCT ACTGGGAGAT
TTTGCCCAAA AGCTTGGGCT GACGGTCAAC CGGCTCAAGT TGGCGCCAGG GTCGGGCGTG
AGTCTGGCCC CCTTCACTGA TGCCATTCGC CTGGTGTCAA CACCTGACAA AGTCACGATC
CTGGATGCCG ATGACATTGA AGGATCCGAT GAGCATCTGC AAACAATGCC TGAACAGGGC
GAAGAGGAGC GTGATGTTTT GGGCGAAATG GAGATCGTAG CCAGGCTCAT GATCACCGGC
GGCGAAGAGA GAGAAGAGGC TCGACTCACT CGCGCAGACC GCAGCGCCAT TAGGCACTGC
ATTCTGACGG CAGCCAGAAC ATGCTTTGAC GCTGAACGAG CAGTCAAGAC GGAGGATGTG
CGTGATGCGC TGAGTGACGC TGGCAAGGAC ACCACCCTTC CGGAAAAGCG CCGAGAACGC
ATGTTTGAGA TGGCTGAAGC CATGGACATG TTCTGCATGG GGGCTGACGG TGAGATGTTC
AACCGGGAGG GTACGCCTTG GCCTGAGGCC GACATCACAA TCCTGGACTT GGCCACCTAC
GCCCGCGAGG GGTATAACGC CCAACTGTCG GTCGCCTACA TCTCGCTGAT CAACACCGTG
AACAACATTG CAGAACGGGA CCAATTCAAG GGGCGTCCGA TCGTCAACTT CACTGACGAG
GGTCACATCA TTACGAAAAA CCCCCTTCTC TCGCCCTACG TCATCAAGAT CACCAAGATG
TGGCGAAAAC TCGGGGCCTG GTTCTGGCTT GCCACTCAGA ACATCGACGA CCTTCCGTCA
GCAGCAGCAC CGATGCTTAA CATGATCGAG TGGTGGATCT GCCTGAACAT GCCACCGGAT
GAAGTGGAGA AAATCACCAC GTTCCGTAAG CTGACGCCCG CGCAAAAGTC ACTGATGCTG
TCAGCCCGTA AAGAGAGCGG AAAGTATACT GAAGGGGTTG TGCTTTCCAA ATCGATGGAG
GTTTTGTTTC GAGCCGTGCC CCCAAGCCTG CTCCTGGCAT TGGCCATGAC TGAGCCGGAA
GAAAAAAAAC AGCGGTACGA TCTAATGCAG TCGTTAGGGG TAGACGAGCT GGGAGCCGCA
ATAGCGATCG CACACGACCT CGACCGCATT CGCGGGATTG AACCGACAAC CATTACATTC
CCCGCTTCGC CCTTGGAGAA CCTGGCATGA
|
|---|
| Protein sequence | MLLEDGKSLA AFYELTPIGT EGRDPEWLRK ARDALENALQ DSFDELDESP WVVQFYARDE
TSWADYLETL HDYVQPRAQG TAFTEMYLQQ FKHHLEAISK PGGLFEDTKV SQLPWRGQQR
RVRMVVYRRC TGDGLVRGQT PSMYLKNICE RLTGGLANAG IKTRRMDRHD IRHWLLHWFN
PHPEHLGSKR QDIDRFFEIV NNRKVEPPEE GTLPLASGDD FSQCLFYSEP QSDAKKGLWY
FDSRPHRVIV LDRLRDAPKT GHLTGENRKG GDALHALFDK LPEDTVLNIT LVITPQDVLE
AHLEKLARKS VGDNQASALT REAVDEARKL IGRKHKLYRG NVVFYLTGKD EQQLESRSME
LANAMLSAGM EPVYPRDEVA PLSSYLRWLP ASFDVNKKHA LDWYTQMMLA QHVANLSPVW
GRASGTGNPG ITLFNRGGAP LTFDPFNKLD RQMNAHLLLF GPTGSGKSAT ANNLLMQLIA
IYRPRLFIIE AGNSFGLLGD FAQKLGLTVN RLKLAPGSGV SLAPFTDAIR LVSTPDKVTI
LDADDIEGSD EHLQTMPEQG EEERDVLGEM EIVARLMITG GEEREEARLT RADRSAIRHC
ILTAARTCFD AERAVKTEDV RDALSDAGKD TTLPEKRRER MFEMAEAMDM FCMGADGEMF
NREGTPWPEA DITILDLATY AREGYNAQLS VAYISLINTV NNIAERDQFK GRPIVNFTDE
GHIITKNPLL SPYVIKITKM WRKLGAWFWL ATQNIDDLPS AAAPMLNMIE WWICLNMPPD
EVEKITTFRK LTPAQKSLML SARKESGKYT EGVVLSKSME VLFRAVPPSL LLALAMTEPE
EKKQRYDLMQ SLGVDELGAA IAIAHDLDRI RGIEPTTITF PASPLENLA
|
|---|
| |