| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0821 |
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| Symbol | |
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| ID | 1182446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 887299 |
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| End bp | 888414 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637392201 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | NP_790668 |
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| Protein GI | 28868049 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCCGGC ACCGCTTTGC TTTGCTTGTT CTTGCCAGTG TTCTGCCGTT GGCCCTGACC
GCCTGCAGCG AAAAAACGCA ACCGGACCCA CGCACAGACG CGCCGTTGGT GCGCGTGGCG
ATCCTCCAGG AAGCCAGCGT AGCGCCCCGC TCGTTCACCG GCACCGTGGC GGCGCGGGTG
CAAAGCGACC TCGGTTTCCG GGTGTCCGGC AAGGTGCTGG AGCGCTTTGT CGATACCGGG
CAGGCCGTCA AGCGCGGCCA ACCGCTGATG CGTATCGACC CTGCCGACCT GAAGCTTGCT
GCGCACGCAC AGCGCGAAGC AGTGACGGCG GCCAAAGCGC AGGCAAAGCA GGCAGCGGAC
GAAGAGACGC GCTATAGAAG CCTGCGCAGC AGCGGCGCAA TTTCAGCCTC CAGCTACGAC
CAGATCAAAG CGACGGCGGA CTCGGCCAAA GCTCAACTCA GTTCGGCCCA AGCGCAGGCT
GAAGTGGCCC TCAACGCGAC CCGATACGCA GACCTTGTAG CGGATGCCGA CGGTATCGTC
ATGGAAACCC TCGTGGAACC CGGTCAGGTC GTCAGCGCAG GGCAAGCAGT GGTGCGCGTG
GCACACGCCG GGCCGCGTGA AGCCGTCATC CAGCTTCCGG AAAACCTGCG CCCTCTCATA
GGTTCTGCCG CCCAGGCCAC GCTGTTCGGC AACAAAGACC TGAGCACCAC GACCCGGCTG
CGACAGCTGT CGGACGTCGC GGACCGCCAG ACCCGCACCT TCGAGGCACG TTATGTGCTG
GAAGGCGAGA TGGCGAATGC ACCGCTCGGC ACCACCATTA CTGTGAAGAT CCCCAGTGCC
GATGTCGCCG GGCAGAGCAC GCTGCAGGTG CCCATAGGTG CGTTATACGA CGCTGGCAAA
GGACCGGGTG TCTGGGTCAT TCAAGGGGAG CCGGCTCAGG TCAACTGGGC ACCGGTAGTG
GTTCAGCACC TTGATGACGA GCACGCCCGC ATCAGTACGC AACTCAAGCC TGGCGCGCGG
ATAGTCGCAC TCGGCGCGCA CCTTCTGCAT GAAGCCCAGC AGGTCAGGGT GATCGCTCCA
GCGAACGTCT CCGTGGCGGA GGGTGCGCGC CCATGA
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| Protein sequence | MLRHRFALLV LASVLPLALT ACSEKTQPDP RTDAPLVRVA ILQEASVAPR SFTGTVAARV
QSDLGFRVSG KVLERFVDTG QAVKRGQPLM RIDPADLKLA AHAQREAVTA AKAQAKQAAD
EETRYRSLRS SGAISASSYD QIKATADSAK AQLSSAQAQA EVALNATRYA DLVADADGIV
METLVEPGQV VSAGQAVVRV AHAGPREAVI QLPENLRPLI GSAAQATLFG NKDLSTTTRL
RQLSDVADRQ TRTFEARYVL EGEMANAPLG TTITVKIPSA DVAGQSTLQV PIGALYDAGK
GPGVWVIQGE PAQVNWAPVV VQHLDDEHAR ISTQLKPGAR IVALGAHLLH EAQQVRVIAP
ANVSVAEGAR P
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