| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0674 |
|---|
| Symbol | |
|---|
| ID | 1182294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 729541 |
|---|
| End bp | 730344 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637392049 |
|---|
| Product | tonB domain protein |
|---|
| Protein accession | NP_790521 |
|---|
| Protein GI | 28867902 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAACGC TGATCCTGCC CCGCCGACTA CCGCCGCGTC AGTTACGCCA CTGGCCAGAA
CAGCCAAACG GCGGCTGCCC GGTCGCCCCG TCTTCGCTGC GCGTGCCGCA ACAGAACCCG
GCGCAACCAC GAGCATGGCC GCAAAACGCA CTGGCGATCA TGGTTGCGCT CGGTTTGCAT
GCTGCACTGG CGTATTGGCT GACAGCCGAG CACCGACAGG CGCCCGAACC CACGCCGCCA
ATGCCGATCA CTGTGCAATG GGTGCCGCCG CCAGCCCCCG TGCCAGCCAC GCAGCCCGTT
TCACAACCGA CGCCACAGCC TGCGGCCGAA CCACAGCAGC AGGCTCCCGC GCCTGCTGCG
CCTAACCCCA CAGCATTGCC CAGGCCCAAA ACGCAGGCGA AAACGGCCGC AGCAAAACCC
GCCGCACCGA CGCATTCCGC GGCACCTTCT ACAGCACCGA CGACACCTGC GCCCGCGCCA
GCACCGTCGC CAGCTGCAGC ACCTGCGCCA GCACAGACCA CCACTGCGCC CATAGGCCGG
GCCGGTTACC TGAACAACCC GCCCCCGGTC TACCCGCCCG CCGCTGCGCG CAGGCACCAG
GAAGGCACGA CATTGCTGCG CGTTCATGTG CTGCCCAGCG GACGTACCGA TCAGGTGCAA
GTGCTGCAAA GCAGTGGCGT CCCGGCGCTG GACGAAGCCG CGCAGGCCGC TGTCCGGCAA
TGGACTTTTA TTCCCGCCAA ACGCGGCGAA ACCCCGGTTG AAGGCTGGGT CAACGTGCCC
CTGGCTTTCA AACTCGCACC CTGA
|
|---|
| Protein sequence | MSTLILPRRL PPRQLRHWPE QPNGGCPVAP SSLRVPQQNP AQPRAWPQNA LAIMVALGLH
AALAYWLTAE HRQAPEPTPP MPITVQWVPP PAPVPATQPV SQPTPQPAAE PQQQAPAPAA
PNPTALPRPK TQAKTAAAKP AAPTHSAAPS TAPTTPAPAP APSPAAAPAP AQTTTAPIGR
AGYLNNPPPV YPPAAARRHQ EGTTLLRVHV LPSGRTDQVQ VLQSSGVPAL DEAAQAAVRQ
WTFIPAKRGE TPVEGWVNVP LAFKLAP
|
|---|
| |