| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0505 |
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| Symbol | |
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| ID | 1182114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 552012 |
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| End bp | 553307 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637391872 |
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| Product | GGDEF domain protein |
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| Protein accession | NP_790353 |
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| Protein GI | 28867734 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCGTCCAT CAGCTGCACG CTTGAGTCAT TTTCTGCCTT CGCTTGGCTT GCTGGTGGCG
GGGTTTGCTG CTGCGTACGT AAAAGACCTC AACGTGTTTC TCACTTCGCT GTTCAACGTG
CTGCCGACAC TGGTGTTGCT GTTGGGCGGT GCGTATTGCT GTGTTTACCG GCGCCAGCGC
GAGCTGTTTC TGATGGTCAC GGTGTATATC GCCTATTACC TTCTCGACAC CCAGACCGAC
TTTTACCGTG ACAACGGCAA GGTGCGCGAG GATGCCGCGG TCATCTTCCA TCTGGTCTGC
CTGCTGCTGC CGGTGTTATT CGGCCTTTAT GCGGCGTGGG AGGAGCGCAC TCACCTGTTC
CAGGATCTGG TGGCGCGGCT TGCGGTGCTG ATTGCGGTGG GCAGCGTGGC TCTGGGGCTG
GAGCAGAGTT ACCCGGTCGA ACTGCAAGTG TGGCTGGCGG ATATTCGCTG GCCCGCGCTG
CACGGTTCGT GGATGAGCCT GATTCAGTTG TCTTACGCGA TGTTTCTGTT GTCGTTCGCC
GTGCTCATCT GGCAGTACCT GGAAAAACCG CGACCGCTGC ATGCCGCACA GATCGTCGGT
CTGCTGGGTT TGTTCTGGGC GCTGCCGAAA ACGTTCATCC TGCCCTTCAC CCTCAACATT
CTCTGCAGCC AGGTCATGCT GATGATCGCC GCCGCCGTTG CTCACGAGGC TTATCAGATG
GCCTTTCGCG ACGAGCTCAC CGGCTTGCCC GGACGCCGGG CGCTCAATGA GCGCATGCAG
CGTCTGGGGC GCAATTATGT GCTGGCGATG AGTGATGTGG ATCACTTCAA GAAATTCAAC
GACACCCACG GCCACGATGT AGGGGATCAG GTGCTGCGTC TGGTCGCCAG CAAACTGTCG
AAAATCACCA ACGGTGGCGG CAGGGCGTAC CGCTATGGCG GTGAAGAATT CGCCATCGTG
TTTGCCGCCA AAACCATCGA TGAATGTATG CCGCACCTGG AAGCCATTCG CGAAACCATC
GCCAATTACG CGATCCAGTT GCGCAACAAA GACAGCCGTC CTCAGGACGA TCAGCAAGGA
CGCCAGCGGC GCAGCGGCGC TCACGAAGCC AGTGTATCGG TGACGGTCAG TATTGGCGTA
GCCGAGCGTC AGCCAGAGCA CCGCACCCCG GAAGAAGTGC TCAAGAGCGC AGACCAGGCG
CTGTACGCGG CCAAAGGCGC AGGGCGCAAT TGTGTGGTCG CCTACGGGCA GTTGAACCGG
CGCGGCGCAG TGCGCACCAC CGAAGCTGCC CACTGA
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| Protein sequence | MRPSAARLSH FLPSLGLLVA GFAAAYVKDL NVFLTSLFNV LPTLVLLLGG AYCCVYRRQR
ELFLMVTVYI AYYLLDTQTD FYRDNGKVRE DAAVIFHLVC LLLPVLFGLY AAWEERTHLF
QDLVARLAVL IAVGSVALGL EQSYPVELQV WLADIRWPAL HGSWMSLIQL SYAMFLLSFA
VLIWQYLEKP RPLHAAQIVG LLGLFWALPK TFILPFTLNI LCSQVMLMIA AAVAHEAYQM
AFRDELTGLP GRRALNERMQ RLGRNYVLAM SDVDHFKKFN DTHGHDVGDQ VLRLVASKLS
KITNGGGRAY RYGGEEFAIV FAAKTIDECM PHLEAIRETI ANYAIQLRNK DSRPQDDQQG
RQRRSGAHEA SVSVTVSIGV AERQPEHRTP EEVLKSADQA LYAAKGAGRN CVVAYGQLNR
RGAVRTTEAA H
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