| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0370 |
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| Symbol | |
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| ID | 1181979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 404865 |
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| End bp | 406241 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637391738 |
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| Product | MATE efflux family protein |
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| Protein accession | NP_790219 |
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| Protein GI | 28867600 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGTTA CCAAAGCAGT CTTCACCGAG GGCTCGGTGT TGCGGCATGT TGTGTTCATG
ACCAGCACCA GTGCGACCAG CCTGTTGTCG ATCTTTCTGA TCGAAGTGCT GACCGTGGTT
TATATCGCGA TGCTGCGCGA CGACAGTTTG CTGGCCGCGT TCGCGGTGGC CAAGACCCTG
ATGTTTTTCA TTATCTCGAT GATTCTTGGC ATCGCCGTGG CAGTCTCTTC AACCGTGTCG
AGAGCCTTGG GCAGTGGCGT GCCGGATCAG GCCAGGCGGC TCGCCAGCAG CGGCTTGCTG
CTGGGCATCA TTGCCACTGT CTGTTGCGCT GTGCTTGAGC TGATATTTCT GGATTCAGCC
ATACAAATGC TGGGCGGCGA GGGCAGTAGT TTCACCGCGG CGCGCGAGTA CCTTTGGCTA
ACCCTTCCGG CCTCGGTGCT GGTTGCCGTC GAGCAACTGT GCGTGCAGAT ACTGCGCAGT
GCAGGGTTCG GCAAACAGGC GATGTGGACC CTGCTGACTG CGACTGCTGC CGTCGCAATC
GCCGACCCGC TGCTTATCAT CGTGTTCGAT CTGGGCCTGG CGGGTGCGGG GGTCGCCTAC
CTGATATCGA GCCTGGTATC GGCGTGCCTG GGATTTTATT ACGTCCACCG TGTCGCCCGC
CTGACCTGTC GGGTCAGCCT GACGCACCTG TCAGGCGACA TCAGCATTAT CGGCCGAACT
GCCGTGCCCG CGGTGATCGG AAACCTGGCG ACACCGGTGG GCATGGCCTA CGTAATGGCT
GCGATGGCGC CATTCGGTGC ACAGGCGCTG GCGGCGATCG GGGTGATCGA CAGGGTCATT
CAGGTAGCGT TTTGCGTGGT GTTTGCCTTG CCCGGCGCGC TGATTCCGAT ACTGGGACAA
AACCTCGGCG CAATGAACAC CGCCCGCGTC TCGCAAGCCG TAAAAACCAC GTACGGGTTG
CTGATCGGCT ACGGGGCAAC CACCTCGCTG TTGCTGATTC TGCTGGCTGA GCCGTTGGCC
AGACTGTTCC ATGTTTCCGG CGAAGGCCTG GTTGTTTTCT CCGCGTTCTG TCGATGGGGC
GGTCTTCTCT GGACGCTGAT CGGGCTCCAG TTCATTGCCA CGTCTATCTT TCTCAGCGCA
GGTCGACCGA TGTACGTGAC GTTGTTTGGC TGGCTGCGGG CCAGCCTGGG AACGGTGCCG
TTCGTGTGGT ATGGCGCACA GGCATTCGGC AGTGTCGGTG TCATGCTCGG GCAACTGCTG
GGCAACACCA TAGTGGCCTT TTGTGCCTGC TGGGTGGCGC ATCTGCTCAT GAAAAAGCGG
ATAGGCAACA AGCTCGACCT AACAGGGAAC CGATCTCGCC ATCGAGGTAA CTCATAG
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| Protein sequence | MAVTKAVFTE GSVLRHVVFM TSTSATSLLS IFLIEVLTVV YIAMLRDDSL LAAFAVAKTL
MFFIISMILG IAVAVSSTVS RALGSGVPDQ ARRLASSGLL LGIIATVCCA VLELIFLDSA
IQMLGGEGSS FTAAREYLWL TLPASVLVAV EQLCVQILRS AGFGKQAMWT LLTATAAVAI
ADPLLIIVFD LGLAGAGVAY LISSLVSACL GFYYVHRVAR LTCRVSLTHL SGDISIIGRT
AVPAVIGNLA TPVGMAYVMA AMAPFGAQAL AAIGVIDRVI QVAFCVVFAL PGALIPILGQ
NLGAMNTARV SQAVKTTYGL LIGYGATTSL LLILLAEPLA RLFHVSGEGL VVFSAFCRWG
GLLWTLIGLQ FIATSIFLSA GRPMYVTLFG WLRASLGTVP FVWYGAQAFG SVGVMLGQLL
GNTIVAFCAC WVAHLLMKKR IGNKLDLTGN RSRHRGNS
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