| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0365 |
|---|
| Symbol | |
|---|
| ID | 1181974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 399709 |
|---|
| End bp | 400608 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637391733 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | NP_790214 |
|---|
| Protein GI | 28867595 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGACA GCCGAGCTGC CTTGTTCGAG CAGCGCCCCG CCGAGCTTGA GGTCATCCTC
CCGCAGCCCG ATCATTGCTT TCGCTGGTAT GAGCACGACT ATCCCTACTC GCTGGCGCGT
TGGAACCACC ATCCTGAATT TGAAATCCAT CTGATCCGCC AAGGCAGCGG CAGGCTGGTC
GCCGGTGATT ACATCGGCGA GTTCGGTGCC GGTCATGTGG CACTGATCTG CCCCGATCTG
CCCCACGACT GGATCGGCGA CCTGGCTCCC GGCGAGCATC TGGCCGGGCG TGACGTGGTG
TTGCAGTTCG ACGGCGCGGC GTTGCTGGCG CTGCGTGGCA CATTGCCGGA AGTGGGTGAC
TTGCAGCGTC TGTTCGAGCA GGCGCGTCGT GGGCTGGAGT TCACTGGCAA AACGGCGGTG
CAGGCGGCGC AACTGCTTGA ACAGATTGGC CCGGCTCAGG GGTTGGAGCG ATTGATTCTG
TTCCTGCAAC TGGTCAACAC ACTGATGAAA GCGCCCACCC AGGACGCTCA CCTGCTGGCC
AGCGCCTGTT ATGCACCGAC GCTGGATGCG CGCAGTTCCG AGCGGATCAA CAAGGCGTTC
GATTATCTGC TGACCGAATT GACCAGTGAT GTTCGCCTGT CGGTCATCGC GCAACGGCTG
GACATGAGTG ATCCGGGCTT TTCACGCTTT TTCAAGCGCA CCACCGGCCA CTGTTTCATT
GATCTGATGC GCAAACTGCG CGTTCAGCGG GCTTGCCGGT TGCTGCTGCA AAGCGAGATG
TCGGTGTCAG ACATCTGCTT TGAAGTCGGT TACGCCAACC TGTCCAACTT CAACCGGCAC
TTTCGCGTGG AAATGCAGCA GACGCCCAGT GAATACCGGC GCGCCGCTGC CCTCGTCTGA
|
|---|
| Protein sequence | MPDSRAALFE QRPAELEVIL PQPDHCFRWY EHDYPYSLAR WNHHPEFEIH LIRQGSGRLV
AGDYIGEFGA GHVALICPDL PHDWIGDLAP GEHLAGRDVV LQFDGAALLA LRGTLPEVGD
LQRLFEQARR GLEFTGKTAV QAAQLLEQIG PAQGLERLIL FLQLVNTLMK APTQDAHLLA
SACYAPTLDA RSSERINKAF DYLLTELTSD VRLSVIAQRL DMSDPGFSRF FKRTTGHCFI
DLMRKLRVQR ACRLLLQSEM SVSDICFEVG YANLSNFNRH FRVEMQQTPS EYRRAAALV
|
|---|
| |