| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0339 |
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| Symbol | |
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| ID | 1181948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 368509 |
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| End bp | 370542 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637391708 |
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| Product | GGDEF domain protein |
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| Protein accession | NP_790189 |
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| Protein GI | 28867570 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGACG AGGCGGAGCG CTGGAGAGAG AAGTACCTCA AAGGCATCGA GCAGCAGGAT
AAGCTCGAAA AGCGCTGGGA CGCGCGGCTC GACTTGTTGC GCCGCGGTTT GGTGCGCAGC
AGCCTGGCGG CGGAAGGCTC CGACCGCGCC GTCGATGAAT GCATGAAGGA AATGCGCGAA
ATCGTCCGCA GGGACGACAT GGACGCAGGT CTGGCAGCCT TGATTCCACG CCTTGAAAAA
GCCGTGCTGG ACTCCGAGCA ACGCCGTGAA GTCCGCGTCG GGCAAATTGG CTCGGCACTG
ACCGCGCTGG TTACACAGTT GCAGGCACTG CCGTTGACTC GAGAGGTGCG CAAACCCCTC
AAGCGCTTTG CCAAGGACCT TGAAGAGCGG GCGGCGCAAG CACGCGAGTT GCCACTGCTG
CTCAGCGAGT TGAGCGGCTT GCAGGGGCAG GCCCTGACTC AGCTTGAAAA ACAGGATGAA
GGCCAGCGCC CGGGGCTTCT GCAACGCCTG TTCGGCTCAC GGGACGAGCA CGGTAACGAG
CATCCTCCTG AAGCGGCCCA TCCGCAAAGC CTTCCGCCCG CGCAGGAAAT GCACGACGAA
GTTCACGAGC CCCCAGAGGC ACCCGACGCA CAGGCCCCGA CATCGCCTGC GCCTGCCGCT
CTGGAAAGAG AGATCGAGAG CAAACCTGCG GTGCCAGCGC CCGAGCCCAA CGCTGAAACA
CCCGCCCTGA CGAACACTGT GGAACCTGTG CCACCGCCAG CGGCTGTTTC GGTCGCTCCA
GTGCCGGTAG AAATTACCGT CGAACCTGCC AGCGTGCCCG TGGAGCATAT CGATACAACC
GACATGCTGG CGCCCACGCC CATCGTGCCC TATCAGCAAC GCCCTGCCCC CGCCGCCCTA
GAGGTGGAGC CGGAAGACGA CCCCGAGCCA GACACCGAAG GTGAAGACAG CGAAGAGGGT
TATGCACTGC CCTCCTCTCC GGAGCCAAGC TACAGTTCGG TCGCCGCACA CATCGAAGAA
ACGCTGCTGG GCCTGCTCAA CGACCTGACC CTGTCAGAGC ATTTCCGGCC GCAAGTCGAA
GACATGCAGT TGCGCCTGAA ACATGGCTTG AACTGGTACG AACTGCTACC GATCCTCGAC
GATCTGGCTG TGCTGATGCT GGCGATCAAC AACGGTGACC AGCAGGAATT CAGCAGCTAT
CTCAAGCAGC TCAACGAGCG CCTCGAGTCT TTCCAGAGCC ACTTGCAGGC CGCCAGTGAA
GACCATGCCG AGAACCAGTC CAGCGCGCGT GACCTGAACG AACAGTTGCG CGAGCAGGTT
GGCGGCTTGC AAAGCAGTGT GCAGGACGCG TACGACCTGA ACAGCCTCAA GCAAGTGCTC
GACAACCGTT TTGAAGGCTT GCTGAGTACC ATGGATAACT ACCAGCTCAA GCGCGACGAG
CGCGAGCGGG AAGTTGCCTC ACGCCTGCAA GGCCTGGCCT CACGTGTCGC GAGCATGGAG
CAGGAAGCGT TGGGGTTCAG GACCCATCTG GAAGAACAGC GCCAGAAAGC CTTGATCGAC
CCGCTTACCG GCCTGCCCAA TCGCGCCTCC TGGGGTGAGC GCCTGGAGCA GGAAATGGCT
GATTGGCAGC GGGATAAGAA CAGCCTGCTG GTGTGCATAC TCGATCTGGA TCATTTCAAG
CGTATCAACG ACGGTTACGG CCACCTGGCC GGCGATAAAG TGTTGAAAAT TGTCGCCAAC
GTCTTCAAAA AGCGCCTGCG CCCCGCCGAC TTTCTCGCAA GGTTTGGTGG CGAAGAGTTT
GTCATGCTGC TGCCGGCGAC GCTTCTCGGC GCAGGGCTGA CATTACTCGA CGAACTGCGC
ACTGCGGTCG AGCTGTGTCC ATTCCACTTC AAAGGCGAGC GAGTGACAAT CACCGTCTCC
ATCGGCGTGA CCGCATTGCG CACCGGTGAG CGAAGCGATA CCGCCATTAA ACGCGCCGAC
CAGGCTTTGT ATAAAGCCAA GGAAAACGGG CGCAACCGGG TCGAGCAAGG CTGA
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| Protein sequence | MSDEAERWRE KYLKGIEQQD KLEKRWDARL DLLRRGLVRS SLAAEGSDRA VDECMKEMRE
IVRRDDMDAG LAALIPRLEK AVLDSEQRRE VRVGQIGSAL TALVTQLQAL PLTREVRKPL
KRFAKDLEER AAQARELPLL LSELSGLQGQ ALTQLEKQDE GQRPGLLQRL FGSRDEHGNE
HPPEAAHPQS LPPAQEMHDE VHEPPEAPDA QAPTSPAPAA LEREIESKPA VPAPEPNAET
PALTNTVEPV PPPAAVSVAP VPVEITVEPA SVPVEHIDTT DMLAPTPIVP YQQRPAPAAL
EVEPEDDPEP DTEGEDSEEG YALPSSPEPS YSSVAAHIEE TLLGLLNDLT LSEHFRPQVE
DMQLRLKHGL NWYELLPILD DLAVLMLAIN NGDQQEFSSY LKQLNERLES FQSHLQAASE
DHAENQSSAR DLNEQLREQV GGLQSSVQDA YDLNSLKQVL DNRFEGLLST MDNYQLKRDE
REREVASRLQ GLASRVASME QEALGFRTHL EEQRQKALID PLTGLPNRAS WGERLEQEMA
DWQRDKNSLL VCILDLDHFK RINDGYGHLA GDKVLKIVAN VFKKRLRPAD FLARFGGEEF
VMLLPATLLG AGLTLLDELR TAVELCPFHF KGERVTITVS IGVTALRTGE RSDTAIKRAD
QALYKAKENG RNRVEQG
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