| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0303 |
|---|
| Symbol | |
|---|
| ID | 1181912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 328831 |
|---|
| End bp | 330219 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637391672 |
|---|
| Product | response regulator |
|---|
| Protein accession | NP_790153 |
|---|
| Protein GI | 28867534 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG1639] Predicted signal transduction protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCTG TAGTTTTACC CGCGGTACCT CGCGTCTTGA TTGCTGAGTC TGATCCGTGG
GTTCGCGAAA CACTCAGCGA TCTGGTGCTG GGCGTGCGCG CGGACGTCGA ACTGGAGATG
TGCACCGATG GCAAGCAAGC CGTCGAGTGG ATGAAGAAGC AACTGCCGGA TCTGGTCATT
GCTGCACGCG AGCTGCCGGG CATCGATGGG CTCAGCCTGT TGCGTGGCGT GCGTAACCTG
CGCCGTCAGC CTGTTATCCC CTTCATTCTG ATCAGCAGCC GTAGTGACAG CGCCAGCGTG
CGTGAAGTCT TGCCGTTGGC TCCGACCGCC TATCTGACCA AGCCCCTGAA CACCGAGGGT
TTGCGCCAGC GCCTTGAAAG CCTGCTGCTG GAGCATCGCG CCCCGGCGCC GGGTGAAGTG
CCTGCGTTGA CGCCTGGGCT GACCCTCACC AAGTTTCTCG ACAAGCGCCG TGACGTGGCG
GACGGCGCGC CGCTATTCGT TGATGTCGCG ACCGCCGTGA AGCTCAGTCA AACCGCGAAT
GGCATCGACG TTGCCTTGCT GGAGCAGGAA CTGCGCAACG ATCCGCACAT CACCGCCGTT
TTAATCGCCG CCGCCAACAG CGCTGCCCAA CACCTGGGCA AGCCGGTGCA GACCATGGGT
GGGGCGCTTG GCATTCTGGG GCCGGTGCAA GGTGCGAACA TTGCATCGGG TTTGGCTAAA
AAGCGCATGG CGGTGCTGAC CGACGATGCG TTGCTGGCAC AAGCCCATGA ATTCTGGACC
ATGTCGCAGC GCACCGCTGA CTACGCGCGC ATTCTGGGTG GCATGCTGGA GTTGGATGTA
GAGCGTTGTT TCTGCGCCGG GCTGTTGCAG TCGCTGGGTG ATCTGGCTGT GCTGGGCTGT
TTGCAGGAGT GGCTGCTGGC TGGTGGCGTG CTGAATGAAG AGGTGATCAA GCAATCGCTG
GAGCAGTATT CCGCTGCCTT CGGTTCTGCG CTGCGCACCC GCTGGCGCTT GCCGCTGGAG
CTGCGTGAGC TGATCGCTGC GGTATATCAG TACAACACCG GCATCTTCAC TCGCGAGGTA
CTGGCGATGA ACCTGGCGGG CCAGATGGCG CGTCTGGGCG AGGAAGAGAG TGTTACCCCG
TTGATCAAGA CTAAGTCGGC GAAGCTGTTG AAGCTAAGCG TTGGCGACTT GCAGCGTCTG
CGCAAGAAAC TCACCGGCGT GACGGATCCG AGCCTGCTGA TACCGCTGCC GGTCGAGCCT
GAGGCCGTTG CCGATGCAGT TGAGGAAGAT GAGCATGACT TGCTGGACCT TACGCCTGAG
GCACCTATTC AAGAGCCCGC GGCGCTTGAG GACCCGGGCG ATGCGGTTCA GGGTGTGACG
AAGAAATAA
|
|---|
| Protein sequence | MTAVVLPAVP RVLIAESDPW VRETLSDLVL GVRADVELEM CTDGKQAVEW MKKQLPDLVI
AARELPGIDG LSLLRGVRNL RRQPVIPFIL ISSRSDSASV REVLPLAPTA YLTKPLNTEG
LRQRLESLLL EHRAPAPGEV PALTPGLTLT KFLDKRRDVA DGAPLFVDVA TAVKLSQTAN
GIDVALLEQE LRNDPHITAV LIAAANSAAQ HLGKPVQTMG GALGILGPVQ GANIASGLAK
KRMAVLTDDA LLAQAHEFWT MSQRTADYAR ILGGMLELDV ERCFCAGLLQ SLGDLAVLGC
LQEWLLAGGV LNEEVIKQSL EQYSAAFGSA LRTRWRLPLE LRELIAAVYQ YNTGIFTREV
LAMNLAGQMA RLGEEESVTP LIKTKSAKLL KLSVGDLQRL RKKLTGVTDP SLLIPLPVEP
EAVADAVEED EHDLLDLTPE APIQEPAALE DPGDAVQGVT KK
|
|---|
| |