| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_A0089 |
|---|
| Symbol | |
|---|
| ID | 1172512 |
|---|
| Type | |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | Yes |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004349 |
|---|
| Strand | + |
|---|
| Start bp | 67890 |
|---|
| End bp | 72206 |
|---|
| Gene Length | 4317 bp |
|---|
| Protein Length | |
|---|
| Translation table | |
|---|
| GC content | 42% |
|---|
| IMG OID | |
|---|
| Product | |
|---|
| Protein accession | |
|---|
| Protein GI | |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATG ACGCTCGGCG GCTATCTATT TTGTCAACCG ATGAAATAGA TGAACTACCC
CATTTCTCAG ATGATGATCG TCGATTATAT TTTGACTTAA GCGCTAAAGA GCGCGAGCTA
TTCGACAATA CCCGAACGTA TTCTGTGGCA GCCCATTTAG TATTGCAACT GGGCTATTTC
AAAGCCAAAC GGCAGTTTTT CAGTTATGAA CAAGAATCGT CAGTACTAAA TGACTTGGAT
TACATTGCCG CGCTGTACTT TCCCACCAAA ACGCTTTCAA GACTGAAAAG TCCATCGAGA
CCGATTAGGG CTGAACAACA ACGAGCAATT ATTGAGTTAT TCCAGTATCA ACAATGTGAT
AATGAGGTAA AAGTTGATTT GGAAGGTAAA GCACAAAGGG TAGCGATGTT ATCGACACAA
CCTATCTTTA TCTTTCGTGA ATTAACCCAA TACTTAGCAC TACACCGTAT TGTCATGCCC
AGTTATCGGT ACATGCAAGA GATGATTGGT AGAGTGGTGG CTTATGAACG CACCCGTATT
GCTCGATTAC TTAGCACTTG CATGACTTCA CTTATCGATC AGCAATTAGC GGCTTTGCTT
CGGGCTGAGT CAGGATTGTT TCGCGTCAGC GCATTAAAAC ATGAAGCTAA AGATTTCAGT
TATAAAGAAT TGCGACATGA AGTCGCACGG CGGCAGTTTT TCCAGCCTCT ACATGAGTTT
GCCAAGCAGT TCCTCATAAC AGCGGGGATC TCCAATGAAA GCGGCAAGTA TTATGCTTCT
ATGGTTAAGT TTTATACCAC TTATAAACTT CAACGCATGA AAAAAGAGAC TGCTCAGTTA
TATCTGCTGT TTTTTGCTTT TCATCGGTTT CAGCAAATAA ATGACAACTT AATTGAAGCA
TTGCTCCATT GGGTCGATCA ATATGAGAAA CAGGCCAAGC GTGCCGCTGA AGAAGCAATG
AATAATGCGG TTACCAATGC AGCGAAAAAT TTACAGGCTG CGGGTCATGT ATTGAGCCTG
TTTACGGATG ACACCATCAC CGATGACACA CCTTTTTCCA TTATTAAAGA AAAAGCCTAT
GCATTGCTTG AACAAGAAAG ATTCCCATTA GTTGCTGATT ACTTACGTAA TATTGCTTTC
GACAAAACGG CATTTGAATG GTCACATTAC ACAAAATTAT CCGCCACATT CAAACGTAAC
TTAAGACAAC TTTTTACTGA TCTGGATTTT GCCGGACGTG TAGAAGACTC TCCTTTGCTT
GAAGCTATCG CATTTTTACA AAACTTATTG CGCACAGAAA AATCACCAAG GCAAACTGAC
CCTAATTCAT TTCCTACTGA GATTATTCCT AAAGGTTTGT TCTGGTCTAA TCCCATCGGA
CACTTAATTT TGAGACAGTA TGGTCAATAA ATTAAGAGGT CTATATGAGT CTGAAAAAAT
CACATAAGAG TTATCCGCAG GCATTTAAAG ATGAAGCCGT CTTGATGGTG CTGGAGCAAG
GTTATAGCGT TGCCGATGCG GCAAAGTCTC TTGGAGTTAG CACGAGCCTG CTTTACAACT
GGAAGGAAAA ACACGAAGCC CTGCAACAAG GCATCACCTT AGAAGAGTCT GAGCGTGATG
AGTTGAAGCG ATTGCGTAGA GAAAACAAAG AATTACGCAT GGAAAAAGAA ATTCTAAAAA
AGGCAAGCGC CTTCTTTGCG AGAGAAATGA AGTAAGATTT CGTTTCATCA AACTGCAATC
TCACCTGTTT CCCATAACAC TGTTATGTCG AGTAATGAGT GTCAGTAAGT CAGGCTATTA
CGATTGGCAT AAACGCCCTG CAAACGTGAT AAGCGTTGAA ACACTGAAGC TTTATCGCCT
TGTTCGACAG CTATTTAAGC AAAGTCGAGG CAGCTTAGGG AATCGTGAAA TGGTGAAGAA
ATTGCGCAAG GAAGGCTACC AGGTTGGTCG CTATCTCGTT CGTAAAATTA TGCACCGCCT
TCGACTCAAA GCAACCCAGC GATGTGCTTA CAAGGTGACG ACACAGCGAA AACACTCAGA
TGCAGTGGCT GATAACCTGT TAAACATGAA CTTTAATCCA GTATCGGCTA ATCAGGTCTG
GGCGGGTGAC GTGACCTATT TAAAGACGGG TGAAGGCTGG ATGTACTTAG CTGTGGTGAT
GGATTTATAT TCACGCCGGA TTGTGGGATG GCGCATAGAC AAACGCATGA CCACAGATTT
GATATCCAAG GCATTAATAA AAGCCTACAA CCTGCGACAA CCAGCGCGAG GGCTGGTATT
TCACAGTGAC CGAGGCTCGC AATATACCAG TAAACAATTC GGTAGGCTGC TATCGAGCTA
TGGTATCCGA GCCAGCATGG GTGATGTGGG TGCGTGTTGG GATAATGCCG TTGTTGAGCG
ATTCTTTGGT AGCTTGAAAC ACGATTGGAT TTTTAAAGTT GCTCAACCAA CAAGGGAGTT
TATGAAGCAA GATGTGACGG CTTACATCAA ATATTACAAC TTGGAGCGAC TTCATTCTGC
TAATAACGAT CTGTCACCTG TAGAGTTTGA GAATTCTCAA GTAAAAGTGT CCAGTTTGGG
TTGACCAGTA CAGGTTTACG CCGATATTTG TTTAGTAAAG AGGGCAAAAC ATTTAAAACG
CTTGATGTAG ATCTCTATGA GTTTTTGGTC TATCGCTTAC TGCGTAACTC ACTGGAAGCG
GGTGATGTGT ACGTTAAACA TAGTAATGAA TTTCGCCGCT TTGAAGATGA CTTAATAAGT
GATCTTAGAT GGCAGGATAA AGAACAAGTA TTGCAAGATA TTGGATCTCC GATTTTATTG
ACCCCCATCC AAGATACTCT GGCAGTATTT CATACTATGT TAGCAGCACG TTATAGTGCG
ATAAACCAAC ACATTTCTGA TGGGATCAAC AAACATATTA AAGTGATGGG TGCTGCCGAA
AAGCGTCGTT GGAAGCTGCT TTATCCGAGC AGTGATGAAT CTGTTAATAG CGATTTTTAC
AGCCAGTTAC CAGGAATTGG TATTGCGGAT CTACTGTGGT TTGTTGCGGG TAATACTGGA
TTTTTAAATG CATTTACCCA TGTATTAGAT CGTTATGTAA AGCATGAAGC TGATCCCCGT
GAAATTTTCG CCTGTATTGT TGCGATGGGA ACAAACATGG GGTTAGCAAA AATGGCTGAG
GTTTCAGGCC TTAGCTCAGC ATCAATGGCG GGGACATCAA GAAATTATCT ACGCTTGGAG
ACATTACGAG CGGCTAATGA TGCGATTAGT AATGCGACCA GCCAGCTACC CGCATTTCAT
CTCTATGATA TTCAGGACAC ACTTCATTCA AGTAGCGATG GCCAGCGGAT GGAAACGCAA
ATTAACACCC TTAACGCTCA ATATTCTCCT AAGTATTTTG GTTTACAGAA AGGTGCCAGC
GCCTACACGT TGGTTGCAAA TCATGTTCCT ATAAATGCAA AGATTATTGG GACTCACGAA
CATGAAAGCC ATTACGTTTT CGATTTATTG CATAACAATA CCTCTGATAT AAAGCCAGAA
CGGCATTCCA CTGACACCCA TGGCACCAAT CAGGTTAATT TTTGGATTTT GCATGCATTT
GGATATCATT TTGCACCTCG TTATCGTGAT TTGCATAAGA AAATGGATAC GTTAGTCGGC
TCACAACATC CCAATGAGTG TGGTGACTGG CTAATAAAGC CTGCCCGAAA AACCAACGAT
GAATTGATTG AACGTGAATG GCCCAATATT CAACGTATCA TGGCATCGCT AGCTCAAAAA
GATGTTACTC AAGCCACGAT TGTTCGCAAA CTCACGAGCT ATTCGCGTCA GAATCAGACC
AAGAAAGCAT TATGGGAGTT AGAAAATATA TGCCGAACGC TATACATTCT CGACTTTGTC
GACGATGTTG GTTTACGTCA ATGTGTACAA AAAGCATTAA ATCGTGGTGA AGCCTATCAT
CGTCTCAGGC GGGCAGTTGC ATTCGTTAAC GGTGGAAAAT TCAGAGTAAA AACGGAAGAG
GAGCAACAAA TTTGGAATGA ATGCTCTCGG CTCATCACCA ACGCGGTCAT TTACTACAAC
ACAGTGCTGC TATCTCGTAT CTATGAACAG AAGCAAACAG TAGGAGATCA AAACGCACTA
GCTCAGCTTC ACAGTATTTC GCCCGTTGCA TGGCAGCACA TCAATATGTA TGGCAATTTT
GAGTTTAGTC CATCAACCTC AAAAATAGAT ATCGATGCAT TGGTTGCTCG ATATGCTGAA
CCAGAATATT GGCAACAAGC GTTGACGGAG AACGAGAATT CAAGTGATGA ATTTTAG
|
|---|
| Protein sequence | |
|---|
| |