Gene SO_4568 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4568 
SymbolnrfD-2 
ID1172154 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp4763717 
End bp4764658 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content47% 
IMG OID637346280 
Productformate-dependent nitrite reductase, nrfD protein 
Protein accessionNP_720085 
Protein GI24376042 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3301] Formate-dependent nitrite reductase, membrane component 
TIGRFAM ID[TIGR03148] cytochrome c nitrite reductase, NrfD subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGCCC TACATTTTGA TACGCTAGTG TGGCATTGGC CGATTGCGAT ATACCTGTTT 
TTAGCTGGGG CATCTGCTGG CGCCATGTTC TTTGCGGTGT TACTCAAACA TTTTGTGCTT 
AAACATAATG CTTACCAGTC TGGTTTTGTG CAGGCGGCTT GTATTGTGGC GCCTGTAGCG 
GTTATGGCGG GTTTAGGCAT CTTAGTTTTG GACTTAACTA AGCCCTTCGA TTTTTGGAAG 
ATCTTAGTTT TCTACAATCC AACATCTGTG ATGTCGATGG GGGTGCTTAT TCTGCTGATT 
TACCAAGTCT TTATGTTTAT GTGGATTGGC TTATTGTTCC GTAAACCTAT CGATGCTTGG 
TGCGAAAACC GCTTCCCGAT TGTGCTGAAG TTGACAGCTT TGCTGAGCCG TTTCGAGGCG 
ACAATTACCG GTTTATTGGT GATCTTCTCT CTTGCTCTCG GAGCTTATAC TGGCTTTTTA 
CTTTCGGCCT TACCCGGCTA CCCAATGTTG AAAAATCCGG TGTTGCCACT GCTGTTTTTG 
GCCTCGGGGC TTTCATCTGG TGCGGCATGC TCACTGCTTG GCGGGGTGTT ACTTAACGCC 
AATCCGAATG CGAAGGAAGT GCACTTTATT CATAAGGTTG AAATTCCGCT GATTTTGGTG 
GAGATAGTGC TGATATTTAC CTTCTTTATG GGCTTAGTGC TGACCGGCGG CCAAAGTAAG 
CTCGCAGCCT TCAATGCGAT AGGTTATGGA TTCTGGGGGT GGATCTTCTG GCTTGGTATC 
GTTGGGATTG GCTTGTCGGG TCCCTTGGCG ATGAACCTGT TTATGACAGC CACTTCAAAA 
CGTAAATGGG CCTATGTAGC AGGAACTGCT TGTTTAAGTC TGATAGGGGT ATTGCTGCTG 
CGTAACTTTA TTCTCTACAC CGGGCAAATG ACGGTCGTTT AA
 
Protein sequence
MSALHFDTLV WHWPIAIYLF LAGASAGAMF FAVLLKHFVL KHNAYQSGFV QAACIVAPVA 
VMAGLGILVL DLTKPFDFWK ILVFYNPTSV MSMGVLILLI YQVFMFMWIG LLFRKPIDAW 
CENRFPIVLK LTALLSRFEA TITGLLVIFS LALGAYTGFL LSALPGYPML KNPVLPLLFL 
ASGLSSGAAC SLLGGVLLNA NPNAKEVHFI HKVEIPLILV EIVLIFTFFM GLVLTGGQSK 
LAAFNAIGYG FWGWIFWLGI VGIGLSGPLA MNLFMTATSK RKWAYVAGTA CLSLIGVLLL 
RNFILYTGQM TVV