| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4473 |
|---|
| Symbol | |
|---|
| ID | 1172067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 4662161 |
|---|
| End bp | 4662727 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637346188 |
|---|
| Product | outer membrane protein, putative |
|---|
| Protein accession | NP_719994 |
|---|
| Protein GI | 24375951 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3637] Opacity protein and related surface antigens |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC TATCTTTAGT TGCGGGTTCT TTATTATCGA TATTAGTGGC AGGCCAAGCT
TTAGCGGCAA CTGACACCAC AGGTTTTTAT GTGGGTGGTG CACTAAACCG CGTGACTGTT
GATGTGCTTG ATGATGCAGA AACAGGGACT GGTTTCGGTG TATACGGTGG TTACAATTTT
AACGAGTGGT TTGGTTTAGA GGCCAATTTA TTTGCAACTG GCGATTTAGG CGATAAGGAT
GTTGATATCT CTGCGGGTGC ATTAACGTTT ACTCCTAAAT TTACTCTGCA AATCAATGAT
ATGTTCTCAG CCTATGCAAA AGTAGGTGTT GCATCTATGG CTATGAATGT TGACGGTGAT
GGATTTGATG AAGACTTCAC TGGTTTTGGC TGGACCTACG GCGTAGGTGT TAATGCCGCT
GTGACTGAGC GTTTAAATGT TCGCTTGAGT TATGATGTGA CTAGTGGTGA TTTAGACGCT
GACCACCATT ATGTAAACTA TGTAAACGTG AAAGATATCG ACACTGATAT TAAGCAACTG
GCTATTGGTG TGCATTACCA GTTTTAA
|
|---|
| Protein sequence | MKKLSLVAGS LLSILVAGQA LAATDTTGFY VGGALNRVTV DVLDDAETGT GFGVYGGYNF
NEWFGLEANL FATGDLGDKD VDISAGALTF TPKFTLQIND MFSAYAKVGV ASMAMNVDGD
GFDEDFTGFG WTYGVGVNAA VTERLNVRLS YDVTSGDLDA DHHYVNYVNV KDIDTDIKQL
AIGVHYQF
|
|---|
| |