| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4457 |
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| Symbol | |
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| ID | 1172054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4646588 |
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| End bp | 4648045 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637346175 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | NP_719978 |
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| Protein GI | 24375935 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCAATC ACGTCTGGAA TGATAAAAAG AAGTTTATTT GGCTACTTTC GGTTTTGTTG
TTAGTTGCCT TTTTAGTGAC CAGTGGTATT AGCTATAAAG TGGCCCATGA TTCTTTGAGT
CAGCAAATTG AGAGCAATAC CCTTCCTTTA ACGAGTGATA ATATTTATTC GGAAATTCAA
CAAGATCTTC TACGTCCGAT CTTTATTTCC TCACTAATGG CGCAGGATAC CTTTGTACGA
GACTGGACAC TAAATCACGA GCAGGAACCT GAAAAACTGA TCCGTTACCT CAAGGAAATC
CAAGATAAGT ACGATACCGT CACCAGCTTT TTTATCTCCG AGCAGAGCCG CAATTATTAC
CACTCATCGG GTGTATTAAA AAAAATTCAA GATGTTGAGC CTAATGATGC CTGGTATTTT
CGTGTTCGTT CGTTGCCAGA ATCAGAACAT TATGAAATCA ATATCGATGC CGATACTGCG
GATCGCACTA AGACGACAGT GTTTGTTAAC TATAAAGTAT TTGATTTTGA AAGTAAGTTT
ATTGGCGTAA CTGGCGTTGG GCTTGCGGTT GAAAAGGTGA AGGCGCTGAT TGAGCTCTAT
CAGAAACGTT ATAATCGTCG AGTTTTTTTC ACCGATAGGC AGGGCAATGT CACTCTCCAT
GGTGATGAAT ATGATGGCGC TAATTCACTG CAAGCCAGCA CTGGCTTGGA GCAGCTAGCA
ACGCGCATTT TAACTAGCCC AAGTGCCGCA TTTAGCTATC AGCGAAATGG TAAAACGGTT
TATTTAAACA GTCGATTAGT GCCTGAGTTC AAGTGGTATT TAGTCGTTGA GCAAGAAGAT
GCCCCACAAG AGCAAGAACT GCTGAATACT TTCTGGGGAA ATTTAGCCCT GAGTTTGGTG
GTGACCATCG GTATATTGTT TATTTCAAAC ATGACGTTAG GGCGTTATCA GCGCAAACTT
GAGATTATGG CATCAACCGA CAAGCTCACC GGTGCCGCTA ATCGCCAAGT CTTTGAAGAG
TATTTCCATC AGGCATTAGA TAAGGCAAAG CTATCGCAAA CATCCATTTC AATTCTCCTT
ATTGATATTG ACCACTTTAA AAAAGTGAAT GATAGCTACG GCCACAGTGT CGGTGATTTG
GTGCTAAAAA CGGTTACCAA TTTGCTGCGT AGCCAGTTAA AACCGCAAGA TATACTTTGC
CGTTGGGGAG GAGAAGAGTT TTTGGTGTTA TTGCCGGAGA TGGATTTAAG CCGTGCGGCA
GAGTTGGCGG AACGTTTCCG CGATTCCATC TCCCAGCGAG AATTGAAGGT CAATGGTGTA
CATATTGCTA TCACAGTCAG TATTGGTGTT GCAGAATATC AAAAGCTGGA ACCTGCAGAA
GATTTGATAA AGCGCGCCGA TTTAGCCTTA TATCAAGCGA AAGAAGCTGG CCGTAATCAA
GTAGTGTTAA ATCAGTGA
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| Protein sequence | MGNHVWNDKK KFIWLLSVLL LVAFLVTSGI SYKVAHDSLS QQIESNTLPL TSDNIYSEIQ
QDLLRPIFIS SLMAQDTFVR DWTLNHEQEP EKLIRYLKEI QDKYDTVTSF FISEQSRNYY
HSSGVLKKIQ DVEPNDAWYF RVRSLPESEH YEINIDADTA DRTKTTVFVN YKVFDFESKF
IGVTGVGLAV EKVKALIELY QKRYNRRVFF TDRQGNVTLH GDEYDGANSL QASTGLEQLA
TRILTSPSAA FSYQRNGKTV YLNSRLVPEF KWYLVVEQED APQEQELLNT FWGNLALSLV
VTIGILFISN MTLGRYQRKL EIMASTDKLT GAANRQVFEE YFHQALDKAK LSQTSISILL
IDIDHFKKVN DSYGHSVGDL VLKTVTNLLR SQLKPQDILC RWGGEEFLVL LPEMDLSRAA
ELAERFRDSI SQRELKVNGV HIAITVSIGV AEYQKLEPAE DLIKRADLAL YQAKEAGRNQ
VVLNQ
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