Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_4327.1 |
Symbol | |
ID | 1171933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 4519556 |
End bp | 4521445 |
Gene Length | 1890 bp |
Protein Length | 629 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637346058 |
Product | multidrug resistance protein |
Protein accession | NP_783541 |
Protein GI | 28275286 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCTTTA CAGATATCTT TATTAGGCGA CCTGTACTCG CCGCCTCAAT CAGCTTTCTC TTGCTGCTGT TAGGCTTTAA CGCCCTCAAT AGCATGCAAG TGCGTGAATA TCCGAAGATG ACTAATACCG TAGTCACGGT ATCGACCAGT TATTACGGTG CGGATGCAAA TCTAATCCAA GGTTTTATTA CACAACCGTT AGAGCAAGCG TTAGCGCAGG CCGATAACGT TGACTTTATG ACGTCAGAGA GCTTCCTCGG CACCTCGAAA ATTTCGGTAT ATATGAAGCT CAATACCGAT CCCAATGGTG CCTTGGCCGA TATTCTCGCC AAAGTAAACT CGGTGAGATC GCAACTGCCC AAAGAGGCTG AAGATCCCAG TGTTGAAATG TCCACTGGCT CGCAAACCTC TGTGCTTTAT ATTTCATTTT TTAGTGACCA AATTAACTCA AGCCAGCTAA CGGATTACCT TGAACGCGTC GTCAAACCTC AGCTCTTTAC CATTGACGGC GTTGCTAAAG TGAATTTATA CGGCGGTATC AAATACGCCA TGCGTATTTG GCTCGATCCG GCCAGAATGG GCGCGTTTAA CCTCTCAGCC AGCGATGTGA TGCAAGTATT GCAGGCGAAC AACTATCAGT CAGCTGTGGG TCAAACCAAC AGTGTTTACA CCCTTTTCAA CGGTACCGCA GACACCCAAG TTGCCACCAT CGAAGAGTTA AAACGCTTAG TGATCGGCAG TAAGGACGGT TTAGTCGTCC GTCTCGGTGA TATTGCCGAT GTTAGCCTCG AAAAGAGCCA TGATATCTAT CGCGCCTTAG CCAATGGTAA AGAGGCGGTG GTCATTGGCC TCGATGTCAC GCCAACGGCT AACCCGCTTA CCGTCGCGGC AGATACCCGC GCCCTACTAC CCGAAATCGA GCGTAACTTA CCGCCATCCA TTGAATCGAG CATTCTGTAC GACTCCTCAC TCGCAATTGA TGAATCGATT AAAGAAGTGG TTAAAACCAT TGGTGAAGCC GCGATTATTG TTATCGTGGT AATCACTCTC TTCTTAGGTT CGCTTCGCGC CGTGGTGATC CCGATTGTGA CCATTCCGCT CTCGCTGATT GGGGTTGCCA TCATCATGCA GATGTTTGGT TTTACTCTCA ATCTGATGAC CCTGCTCGCC ATGGTGCTCG CCATTGGTCT CGTGGTTGAC GATGCGATTG TGGTGGTCGA AAACGTCGAC AGGCATATTA AGCTGGGTGA GTCGCCCTTT AGAGCGGCGA TTATCGGTAC TCGCGAAATC GCGGTGCCCG TTATTTCGAT GACCATTACC CTCGCCGCGG TGTATGCACC GATTGCCTTA ATGGGCGGGA TCACAGGCTC ATTATTTAAA GAGTTCGCCC TTACACTCGC AGGTTCTGTG TTTATCTCGG GCATAGTGGC ACTCACACTG TCACCCATGA TGTGTGCCAA AATCCTCAAA CCCCATACCA CGCCAAATCG CTTCGAAATG GGGGTAGAAA ACTTCCTCAC CGGTCTAACT CGCCGTTACA GCAACATGCT AGATGCGGTG ATGTTACATC GTCCTGTGAT CGTCGCCTTT GCGATTATCG TGTTCGCTTC ACTGCCGGTA CTGTTTAAGT TTATCCCGTC AGAACTTGCA CCGAACGAAG ATAAAGGCGT AGTGATGATG ATGGGCACGG CACCTTCGAC CGCTAACTTG GACTACATCC AAGCCAATAT GGGCTTAGTC ACGGATATGA TTAAGGCACA GCCTGAATCA GCCGCGTCAC TCGCCTTCGT GGGCGTACCA AGTTCCAGCC AAGCCTTCGG GATCGCGCCA TTAGTGCCCT GGAGTGAGCG GGATAAGAGC CCAAAAACAA ATGCAGGAGT TTTTTGCTAA
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Protein sequence | MRFTDIFIRR PVLAASISFL LLLLGFNALN SMQVREYPKM TNTVVTVSTS YYGADANLIQ GFITQPLEQA LAQADNVDFM TSESFLGTSK ISVYMKLNTD PNGALADILA KVNSVRSQLP KEAEDPSVEM STGSQTSVLY ISFFSDQINS SQLTDYLERV VKPQLFTIDG VAKVNLYGGI KYAMRIWLDP ARMGAFNLSA SDVMQVLQAN NYQSAVGQTN SVYTLFNGTA DTQVATIEEL KRLVIGSKDG LVVRLGDIAD VSLEKSHDIY RALANGKEAV VIGLDVTPTA NPLTVAADTR ALLPEIERNL PPSIESSILY DSSLAIDESI KEVVKTIGEA AIIVIVVITL FLGSLRAVVI PIVTIPLSLI GVAIIMQMFG FTLNLMTLLA MVLAIGLVVD DAIVVVENVD RHIKLGESPF RAAIIGTREI AVPVISMTIT LAAVYAPIAL MGGITGSLFK EFALTLAGSV FISGIVALTL SPMMCAKILK PHTTPNRFEM GVENFLTGLT RRYSNMLDAV MLHRPVIVAF AIIVFASLPV LFKFIPSELA PNEDKGVVMM MGTAPSTANL DYIQANMGLV TDMIKAQPES AASLAFVGVP SSSQAFGIAP LVPWSERDKS PKTNAGVFC
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