Gene SO_4323 details

Gene Information

• Locus tag: SO_4323
• ID: 1171928
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 4509898
• End bp: 4511817
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637346049
• Product: GGDEF domain-containing protein
• Protein accession: NP_719848
• Protein GI: 24375805
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACACTGT TTAGACAGAT TTATTCGCTG CTTTTTAGCC TGTTCTTGTT AGTTGTAGCA 
AGTCTTGGCT ATGTGCAATT TACGGAGACT CAAAGCTTTT TAACCAAGCA AATGGAATCG 
GATCTAAACA ATGCCAGTAC CTCGCTTGGT TTAATGCTGA CACCCGCACT TGAGGCCGGA 
GATACCGTTG CAGCAGAAAC CCTAGTCAAC GTTATTTTTG AAGGCGGCTA TTATAACAAT 
ATCAAACTGA TATGGATGGT TGACGGCAAA CAGCAGGAAT GGAATAACCC TATTAAAATT 
GATGATGTAC CTCAATGGTT TATCAATTTG AATCTCTTTA AAACCATCAA AAAAGAAAGC 
ACTATTACCT CAGGGTGGTT ACAACTAGCA CAACTTGAAA TTACGGCCCA TCCCGGCTTT 
GGTTACCATG AATTATGGCG GATCATGTCC AACACTCTTA TCGTATTTTC ATTGCTGTTT 
TTGGTCGCCA TCTTTACCGC AAGATTAGGA CTAACGTGGA TTTTAAAACC ATTAAATGCC 
CTATCTGAAC ATGCCAAAAA GATTGCAGCG AGACAGTTTG GCCCCGATAT GCCACTCCCT 
AGCACCACCG AATTAAAGGA TTTGGTCACG GCATTTAATA GTATGTCAGC CCAACTCAAA 
CACCTTTTTC AATCCCTAGA TGAAGAAGTC GGCTCATTAC GTAAAAAGAA CCTCACCGAT 
CCCGCCTCTG GACTTCCTAA TCGTCAATAT GTGGTCAGTC GTCTTAATGG CTGGCTAAGC 
GAACCTAGCA GTGGCGCACT ATTTTTAGCT AAACTCGATT GGCTCGAAGA AGTACACAGT 
AAGTATGGAT ACCAAGTTCG CGATGAAACG ATTCGCCTGC TCGCAGAGAA GCTAGTACAA 
CAATTAAATG AAATCACACC ATCGGTCATT GCACGGATTG CCGCTTTTGA GTTTGCCTTC 
CTTGTTACCG ATGTCGAGCA CGATCAAATT AGCAAATACC TGCAAACACT GATCCGCACA 
ATCAATCAAG AAATCTCTAA AGCGGGTTGT AAACCCAATG AGAATTTTGC GATAGGAGTT 
GCAGAGCGCG TTGGACAAAT GAAGGTTTCC GACATTCTTG CACAAGCGGA TAATGCCTTG 
CAAAAAGCGC TAAAAGACAA CAAAACCTTT CATTGGTTTG AGACGACAGA ACAACAGATC 
TTCACTCGTG AGCAATGGCG CGACAACCTA AGCCACGCCA TTAGCAACAA GAAATTTAAA 
TTCCGCTGGC AGCCGATCCA GTTTTGTAAT GGCGATGGCG TCACCCAACG GGAACTCTAC 
TGCCAACTCG AACTGGGTGA TAAACTTACC CATGCTGGGC AGTTTATGCC CTATATAGAG 
CTATTATCAT TGGGTTCACT GCTCGATAAA TGCTTAATCG AAACGGTTTA CGAGCAAAAG 
CTGCTTGAGC GCAACTACGA GCCATTGGCA ATAAACTTAA CCCATCAAAG TCTCAGTGAT 
AGTCAATTTC ATCAATGGCT CAATCACTTC CTGCGTAATG CCCCACAGGT TGAACGAATG 
TGTTTCGAAA TCCCAGAAGC GGGCGTTTAT AGCGATTTAG AATCCTGTAC GCGCCTTTGC 
AATATTATTA GGGATAATGG TGCTAAATTT GGTATTGACC ATTTTGGCCG CCAATTTGGC 
TCAATGTCTT ACCTACAAGG CTTAAGACCA AGCTATGTGA AACTCGATCA ATCCTTTGCC 
TACTATGATG AGGCCTCACA TAATAGCGAG CTCTGCCGCG CTATTATCAA TGTCGCCAAG 
GGATTGGATA TTCAAGTCAT CGTTACAGGC ATTCAAGAAA AAGCACAGCT AGAACGTTTT 
AATGAGCTTA AAACAGACGC CTATCAGGGC TTTATTGCTC CACCAGAGAA TATCGAATAA 

 

Protein sequence

MTLFRQIYSL LFSLFLLVVA SLGYVQFTET QSFLTKQMES DLNNASTSLG LMLTPALEAG 
DTVAAETLVN VIFEGGYYNN IKLIWMVDGK QQEWNNPIKI DDVPQWFINL NLFKTIKKES 
TITSGWLQLA QLEITAHPGF GYHELWRIMS NTLIVFSLLF LVAIFTARLG LTWILKPLNA 
LSEHAKKIAA RQFGPDMPLP STTELKDLVT AFNSMSAQLK HLFQSLDEEV GSLRKKNLTD 
PASGLPNRQY VVSRLNGWLS EPSSGALFLA KLDWLEEVHS KYGYQVRDET IRLLAEKLVQ 
QLNEITPSVI ARIAAFEFAF LVTDVEHDQI SKYLQTLIRT INQEISKAGC KPNENFAIGV 
AERVGQMKVS DILAQADNAL QKALKDNKTF HWFETTEQQI FTREQWRDNL SHAISNKKFK 
FRWQPIQFCN GDGVTQRELY CQLELGDKLT HAGQFMPYIE LLSLGSLLDK CLIETVYEQK 
LLERNYEPLA INLTHQSLSD SQFHQWLNHF LRNAPQVERM CFEIPEAGVY SDLESCTRLC 
NIIRDNGAKF GIDHFGRQFG SMSYLQGLRP SYVKLDQSFA YYDEASHNSE LCRAIINVAK 
GLDIQVIVTG IQEKAQLERF NELKTDAYQG FIAPPENIE