Gene SO_4207 details

Gene Information

• Locus tag: SO_4207
• ID: 1171811
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 4372704
• End bp: 4374581
• Gene Length: 1878 bp
• Protein Length: 625 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637345929
• Product: GGDEF domain-containing protein
• Protein accession: NP_719735
• Protein GI: 24375692
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAAGT TAGGCAACAT ATTGGTTTTG CTTATCAGCA TGTTTATGTC ATCCGCTGTT 
TATGCCGACA CGATGAGCAT AGATGACCAT ACACCAACAC CGCTCAATCT AATGCCTTGG 
CTTACGGTAA CTCACCTAAA TACCACAAGT GAATTAGCAG ATATTCAAGC ACTCCCAAAA 
ACAAAATGGC ATCAGTTTAC CAGTGGCGAT ATTCAACGCC TTAGCCAACA TAATTTTTGG 
CTGACATTTA GCATCCAAAG TGGTGACGAA AGCCTCTCCC GTATTCTCGC CCTCGACAAT 
CCGTTATTAG ATAAAGTGAC CCTTTATCAT TTAGTGGGTA ACCAGCTCAT CAACACCACC 
TATATGGGGG ATACGCTTCC CTATCAGCAA CGCCCACTAC TGAGTAATAT TTTTCTATAC 
CCTTTTAAAA TCAATGCAAA TGAACAACAC ACCTTCTATC TGCATATAGA AACTGAAGGT 
AATGCTGCCG TTCCTATTAA TCTATGGTCA GCTAATGATT TGGTACAAAT TGCCGAATCA 
ACAGCAGTCG AGCATGGGTT TCAGCTTGGT GTGCTCGCAG CCATCGGGAT CTTCAGTCTA 
TTTATCGCAT TGGCTTCGGG TTCATTCAGT TACAGTTATT ACTCCGGCTA TGTTCTCTGC 
ATGACACTCT TGGTCGCCAC CATTAATGGG TTTGCATTCC GATTTCTCTG GCCTAATTGG 
CCCGCATTGC AGCAACTGAT GGTTCCAATG CTACTGCCTT TAGTTATGGG CTTTGCCTTG 
ATGTTTACCG AAAAAATCTT ACAACTGAAA TACTATAATC GTCACATGCT ATTGATGTGC 
CGTTACAGTG CAGTCTATAT CCTCTTAGTA TGCTTATTAG TCCCCTTTAC CCGTTACGGT 
ACCGTACTCT ACATCGAAAT AGTCTCTGTT GCCGTACTCA GTATCATTAT GATGATACTC 
GCTATTATTC AAGCTGTTAG GGGACAGAAA TTAGCCAAGC TATATACTAT TGGCTGGGTG 
AGTATGCTGA CGGGGGCATG CCTGAGTAGC CTATTGTATT TGAGTGTTAT TGAACTGAAT 
ATCAAACCGC AGACACCTGT GATGCTGGGA TTAACCTTCG AAATTATCTT TATGTCACTT 
GTACTGGCGA TTCGCTATAA CGATGAACGT AAAGCTAAAC AACGCATTCA GCAGGAAGCA 
CTAAAACAAG CGCAAAAAAT TCGTAGTGCG CGGGAAGAAG CCTTAAAGGT TGAGGCCGAG 
ACGAATGAAA GACTCGAGCA AAAGGTGCAA GAGCGCACCT TAGAACTTGA GATAACGCTA 
CGCGAGTTAC ACGAAGTCAA TCAAAAGCTT ACCGAACAAA GCACCATAGA TAGCTTAACG 
GGAGTCAAAA ACCGTAGCGC CTTCGATAAA CGCCTGTTGG CAGAGAGCCG TATTAGCCGC 
CGTCAAGAAA CGCCAATTGC CCTATTGATG CTTGATATCG ACCGATTTAA ATCCATCAAT 
GATCAATTCG GCCATTTAGC GGGCGATCAA GCATTAAAAC TCATTGCGCA AACCTTACAG 
CAGCATTTAA AACGACCAAC CGATCTAGTA TCACGTTTTG GTGGAGAAGA GTTTGCTATT 
ATTCTTCCCA ATACAACTGC AGATGGCGCG CTTCAAGTCG CTGAAAGTAT AAGAGATACA 
GTAAGTTGTA TCGGCCTAAC ATGGGAAGGA AAGCCCATTC CACTCACCGT CAGTATTGGC 
GTGAGTGCCG ACGTTATCAT GAATGAACAA CACAGTACCG AATTATTAGA GCAAGCAGAC 
AAAGCCCTCT ACCAAGCAAA AAATAGCGGA CGCAATCAAG TAAAATTGTA TGCGCCAGCA 
CAAACAGAAC CTAATTAG 

 

Protein sequence

MAKLGNILVL LISMFMSSAV YADTMSIDDH TPTPLNLMPW LTVTHLNTTS ELADIQALPK 
TKWHQFTSGD IQRLSQHNFW LTFSIQSGDE SLSRILALDN PLLDKVTLYH LVGNQLINTT 
YMGDTLPYQQ RPLLSNIFLY PFKINANEQH TFYLHIETEG NAAVPINLWS ANDLVQIAES 
TAVEHGFQLG VLAAIGIFSL FIALASGSFS YSYYSGYVLC MTLLVATING FAFRFLWPNW 
PALQQLMVPM LLPLVMGFAL MFTEKILQLK YYNRHMLLMC RYSAVYILLV CLLVPFTRYG 
TVLYIEIVSV AVLSIIMMIL AIIQAVRGQK LAKLYTIGWV SMLTGACLSS LLYLSVIELN 
IKPQTPVMLG LTFEIIFMSL VLAIRYNDER KAKQRIQQEA LKQAQKIRSA REEALKVEAE 
TNERLEQKVQ ERTLELEITL RELHEVNQKL TEQSTIDSLT GVKNRSAFDK RLLAESRISR 
RQETPIALLM LDIDRFKSIN DQFGHLAGDQ ALKLIAQTLQ QHLKRPTDLV SRFGGEEFAI 
ILPNTTADGA LQVAESIRDT VSCIGLTWEG KPIPLTVSIG VSADVIMNEQ HSTELLEQAD 
KALYQAKNSG RNQVKLYAPA QTEPN