Gene SO_4174 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4174 
Symbol 
ID1171780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp4346500 
End bp4347420 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content52% 
IMG OID637345899 
ProductNAD dependent epimerase/dehydratase family protein 
Protein accessionNP_719703 
Protein GI24375660 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1091] dTDP-4-dehydrorhamnose reductase 
TIGRFAM ID[TIGR01214] dTDP-4-dehydrorhamnose reductase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAATA TCATGGTGAC GGGCGCAACC GGATTGCTCG GCAGGGCGGT GGTTAAACAG 
TTAACTGCCG CAGGGCATCG GGTGATAGCC ACCGGCTTTA GCTGCGCCGA AGCGAATATC 
CATAAACTCG ATTTAACCCA AGCGATTGCG GTAGAAGCCT TTATTGCCCG CGAACGGCCA 
GAGGTTATCG TGCACTGCGC CGCAGAGCGT CGCCCCGATG TGTCTGAGCA GTCTCCGGAA 
CAGGCTTTGG CGCTTAATCT TAGTGCTAGC CAAACCCTAG CTAAGGCCGC TAAACAGCAT 
GGAGCTTGGC TGCTGTATAT CTCAACCGAC TATGTGTTTG ATGGCACAAC GCCGCCCTAT 
GCCGAAGATG CCGCGCCCAA TCCGGTTAAC TTTTATGGTG AGTCTAAATT ACAGGGCGAA 
ACCTGTGTGC TGAATACCGA CAGCCGTTTT GCGGTATTAC GTTTACCGAT ACTCTACGGC 
GAAGTGACTC AACTGAGCGA ATCTGCGGTA TTAGTGTTAA TCAATCAATT GTTGGATAGC 
AGGCCGCAGC GGGTCGATGC TTGGGCTATT CGTTCGCCTA CCTCGACGGC GGATATTGCT 
GGCGCCATCG CTAAGTTGAT CAAGCGGCAG TTACATGCTG CCGATGTGTT AGGGATTTAT 
CATTTTAGTT CGCCGCAAAC CATGACTAAG TACCAAATGC TACTGAGCTT AGGTGAGTTA 
TTGGCGATTG ACACCGCGCA TTTAACTCCA GAACTTACAC CGATGGATAG CGCTAAAAGG 
CCGCAGAACT GCACCTTAAG TTGCGGGCGT TTAGCGGCGC TGGGCATTTA TTCTGAGTTG 
GAATTTAGCG CAGGGCTTAA TCAGGCGCTC GCTCAATCCA GTGCAGCACT TGCAGCTGTT 
GGCCTTAAGC TTAAGGAATA A
 
Protein sequence
MANIMVTGAT GLLGRAVVKQ LTAAGHRVIA TGFSCAEANI HKLDLTQAIA VEAFIARERP 
EVIVHCAAER RPDVSEQSPE QALALNLSAS QTLAKAAKQH GAWLLYISTD YVFDGTTPPY 
AEDAAPNPVN FYGESKLQGE TCVLNTDSRF AVLRLPILYG EVTQLSESAV LVLINQLLDS 
RPQRVDAWAI RSPTSTADIA GAIAKLIKRQ LHAADVLGIY HFSSPQTMTK YQMLLSLGEL 
LAIDTAHLTP ELTPMDSAKR PQNCTLSCGR LAALGIYSEL EFSAGLNQAL AQSSAALAAV 
GLKLKE