| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4149 |
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| Symbol | |
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| ID | 1171758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 4309601 |
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| End bp | 4324663 |
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| Gene Length | 15063 bp |
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| Protein Length | 5020 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637345877 |
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| Product | RTX toxin, putative |
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| Protein accession | NP_719678 |
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| Protein GI | 24375635 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01965] VCBS repeat |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCCGAAC GCGCCGAGAC TGCTGCCGCT GGCCAGCACA TGGCCGTTGG CATCCACCAC
GCTAGGGTTG CCGCTGGTGA AGGCCAACCT CATGGAGCCA AGGGCGCCAA CATCCCCGGC
ATCGATGGCG TGGCCGATCA GGTTGTAAGG CGCCCAATTG CTCTTAATGG TGCTGACGAT
GCTGGACCAG ATGTCGTGCC GGGGCTCGTC CGCGCCCTGG ATGCTCAGGC TCAGGGTGTG
GGCCGTGCCG TCAACGCTGT GCACGGTGAA GCTTTCGGTG GCGCTTTGCC CGGCGTGCAG
GGCCTGCACA GCGGGGCTGT TGTTGTCGGC CTTGTAGACC CAACTGCCGT CCGCACCCAG
CGAGAGGTGG CCGAACTTGC CAGCCAGGTC TGA
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| Protein sequence | MSPKKPLTLS TAKRKSRISA KLAKKSEIAA KKLDKDVAKL KVKEFREGEV QSTATPDIVA
SKSWRLPSHA ATQLVNTEES TEQKPDSQSA TVDIDNRHLT AQSASSSTDS EKTLSELPQQ
ADETQTKNAP KFQDYGSSES THLGQGPHFD DTQLPLVTLS QLPEIGHVKQ QIEPAALTVS
MARTTLTQIV RPQIISTEQH NPLTIDEQAG HQSVKEDAPV ASASGKLHAH GGTVTPLQWT
VAVNQGQFGR LDIDPTTGEW HYQLDNNALS TDALAEGEHQ TEQFTITVSS PNGEQVNTVI
IIDVEGSNDL PQILGSHLAS INAADSLPAV TGQLHSIDPD HNDAVSWAVL DGQGQYGQLS
INPLTGQWQY QLNTHATATL ALVSGQQVTE TFTVTATDQS GHPVSQQVSI QVNGADNVAI
IQGEIIGLVT EDTQANNGQL TVSGQLSIQD PDRDQTHFSA GSLQGQYGYL TIDVNGHWIY
SADNSLATVQ SLKSGEHLTD TFTIHSADGT AQNITVTING TDDKAEISGT TSASLTEDDN
IHQGMLRANG NLAITDNDHE PHLFTATEQY GQFGTLIIDE LGHWTYTADN SQTAIQALKT
GESITDTLVV QTQDGTQQTI SISIHGTDDH SVIMGTSVMR VFEDKRLSQG QLHTDGQLWV
SNPDTGRAGF AAEQLQGQFG ILSINTHGHW TYTADNNNPS IQALKHGESL TETLFVQALD
GTTQKIAILI KGADDKAIIG GTDTATLVED QSPQHGQLQA HGTLTITDPD AGQAQFTALT
DVAGSNGYGH FSLDSSGVWT YNADNTQTAV QQLKTGESLT DTLTVTSADR TSHTVTVTIQ
GCNDAPVLVG QTQSVTEDGT QLSGKMIATD VDAGDTQTFS LVNAIDGFTL NADGSYNFDP
SHASYQHLTA GQTQDVVIAI TVTDSTGATS YQNLTISVTG ANDGAVIGGV NIGAVSEDNT
LTASGKLTIS DVDSTQAGFI AQNNLAATHG CFTLSASGDW TYALDNSNAA VQALKTGESL
TDTVTINSID GTQHTIAVTI NGSNDGAIIA GVDTATATED ANVIAGNIEA CGQLTISDPD
AGQSHFTAQT DVAGSSGYGQ FSLNSTGAWT YSADNTQAAI QQLKAGDSLT DTLTITSADG
TIHTLTVTIQ GTNDAPVLAA QSQAVTEDGT QLSGHMVATD ADAGDNLSFS IAQPVDGFTL
NADGSYSFDP SHASYQHLAA GQTQTITIPV TVTDVAGATS TRDLVIKLNG SNDGAVITGT
DVAAVTEDQT AGSGHFLQVT GTLTVADVDA GEAVFQATST KSQLGDFILH SDGSWMYQAD
NTNTAVQALK AGQQTTDSFT VLSTDGTAHT ITITITGSND APTVAHALTT TTATEDSAFS
FSIPTGTFAD IDAGDTLTLS AGSLPAWLHF DAATGTFSGT PTNGDVGTMQ VTITATDANG
AQVSTTFALT VANTNDAPTL NPIATVHATE DGAQVTGQFT ATDPDSGDTL IYSIAQPVNG
FTLNADGSYS FDPSHTSYQQ LAAGQTQDVL IPITVTDSAG ATSTQNLTIT VTGSNDGAVI
SGTDSGSVIE DQQVSATHIL SCGGKLAVTD VDTGEATFAV QHGTGANGYG SFVLGPSGTW
TYSADNTQAA IQQLKAGETL TDTFTVSSTD GTTHTVTVTI QGSNDAPVLA AQTKAVTEDG
ALLTGKMVAT DADAGDTQVF STAQTVDGFT LNADGSYKFD PSHASYQHLA AGQTQDMVIP
VTVTDNAGAT STQNLTITVT GTNDAAVVSG RVANAVNEDG VVSTGGLLRA SGLLTVVDPD
AGEAVFVAQT GVAGAGHYGS FSIDASGHYS YTADNSQTAI QQLKAGETLA DRFTVTTADG
TQQVVTITIK GAEDRPVLQA QTHAVTEDGA RLTGQMLATD VDAGDTQRFS VAHPVAGFVL
NPDGSFSFNP AHASYQHLAA GQTQDIVIPV TVIDSAGGVS TQNLTITVTG VNDRAVISGV
SNGRITEDQG VSATHTLSCG GKLDVTDVDT GEAAFAVQHG AGANGYGNFV LDPSGNWTYS
ADNTQSAIQQ LKAGETLTGT FTVSSTDGTT HTVTVTIQGT NDAPVLAAQT QAVTEDGTLL
QGRMVATDVD ANDTKTFSSA QSVDGFTLNA DGSYSFDPSH ASYQHLAAGQ TQTLTIPVTV
TDSEGATSTQ NLTIRLTGTN DAPHISGADV GRVVEDQTLS VSGKLAISDA DDGQAHFIAQ
TATTGSYGSL TIGEDGQWQY QLDNTKPEVQ ALKSTETATD TFTVHSADGS SHNITITIQG
QRDNVVIGGV DVGVVKEDVS AVTGGHLVAT GESAEFVPLQ QHTTLGNFAM DASGAWTYTL
DNSHASTQAL KAGETATDTV SITHTDGTTH TVTITVMGTN DAPVLTAQSQ AVTEDSTLLT
GQITASDVDR GDTQIFSLAH AVDGFTLNTD GRYSFDPAHG SYQHLATGQT QTLTIPIIVT
DSVGASSTAN LTITLTGTND GATIGGVSTG TASEDSTLLT TGQLTIADAD DGEAHFVAQP
HIQGLHGSFS LSEDGQWRYS ADSSQAAVQQ LKAGDSLSEH FTVHSADGTA HTVTVTLQGT
NDAPVLQAQH QSVSEDASLL QGQMVASDVD HGDTQTFSIA QAVDGFTLNA DGSYSFDPSN
AAYQHLTAGQ TEDLVIPVTV TDSAGASHTQ NLTITITGTN DGAVIGGAFT GAVTEDQSVQ
SGQLQASGQL TITDADSGES HFIPQTDVLG SDGLGRFSLD AQGQWSYSAD NSQKAIQQLA
AGATLNDSFT VQGADGAQHT VTVTLTGTND APQFHLQVAP DYHPEVESSD VLPLVINNIG
SSRIAQYLDI QQILQGQAPI GAYANTCVTV SLGGLALIGP DGQAAQVFAA GQEFKLQTLV
DWQQQGPGHE FRVFGPKGTT ELDLSLHDAG DPNHITGPHG QASLYVNQVM IWPPFHAWQA
SAGSGTGTAT DSGLLTATEG GPALSGQFHA SDIDVGDTLA FSLGHPVDGF TLNADDSYSF
DPAHPSYQHL AAGQRETLSI PITVTDSAGA STTQTLSILL RGANDAATFG GVETGATQED
RSDALSGQLT VADADDGEAH FIAQSGTAGS YGQFSLDENG QWHYQIDNSK PEVQALRDGQ
NVTDSFTVRS ADGTAHTVNI SIAGKNDSAV ITGEDHQTLT EDQNVSGGQL IAHGQLHAST
PDAGGDQFTP LSDLAGKFGH LSLGADGSWV YKADNNSPAV QALHAGQSAT ESFTVHSVDG
TAHTLSLSIQ GADEPRHDIW SSIVSTIKSN WAPYNLIGHA IDAGDVGALG SMRLAFTSGN
PSVVDANGHV LASGSSLGAF GHDISMGQVV DLLKSHPGAR LVLDGNVGGS SGFYLHDSGD
VMELHFRGLS HYNQANSPMG QLPIDGLPTP LSAAGTVPDV SDLTISVTDI SVDHASQLQT
SGQLNISDAD AGENHFNAQK DVAGTYGSFS IDASGHWVYS VDNGQAAVQN LQAGAQLTDS
FMVTSADGSS HVISVAVYGK NDAPVLFAQS QSVSEDGALL SGQMHASDVD AGDTLSFRID
QAVAGFTLNA DGSYSFDPSN AAYQHLAAGQ TQTLVIPVFV TDHMGASSVQ DLTITLTGAN
DGPQVLHATA ATAGDLGAVN EDTPRVFTEA ELLQAVGATD PDDGGSLHIV AGSLTSSHGT
FTGDAAHGFT FTPTANFSGQ DIDLQFSVTD GSATREAHVQ LDITPVADAP LRVTAPTITT
DFDSISLPGV GWTQTDPSPT GWHTDESSGV EIGQERLYGG SGNNQILSLT ASWGSNIYRE
LPTQAGEAVH LGFDLSARPG FAVTPLEVLW EGKVIDTITP VAGSYSMLHH DYDLLANGSN
SRLELRASGQ GEARVLIDNI QIGPPEHVLL GDHDTLLKPY LGFQLADTDG SETLSYGIHG
LPVGFTLTDG THSAIVSSAG QVIETAGWNQ DTLAVRAPQG FQGTVSIQVT AHAEEGSNHQ
TANAADLTLE LRLVPVSHAA VISGENAITL TEDQQVDALG FLEHFGQLNV SDPDAGEAKF
VAQNAVNTQY GRYTIGGDGY WLYEADNKLP AIQQLKTGES LTDSFTVHSI DGTPQTITVT
IQGQDDVAAF VPQAQAAQVD SADVYTQISV QLLDSQHREF EFMGEVLLAN TDPRNYIDAE
MSFTNTGVAL RAPDGSLSKV YHAEGGMTTV PVMDLRAWHN KGQGYEVVLV DATGMPVNVF
PHDAGDPDKL SGFNQYVTGF SGPFNAAVVL YPDMQAASSG GAVQGGAFVP AIAPLLYDAA
HVLEDNGQQI SGFIEVQDAD KGQSSMQAMT DHHAAHGTFS IDVNGDWVYQ LDSRRPDVQA
LKAGETLLET ITVHSADGTP HEVNITIHGQ NDGAVISGAD TGQLVEDQNV SAASTLEAHG
QLTVTDADAG EAAFVAQNAV ATQFGHISID ASGAWRYEVD NNKADVQALK AGESLTEHLT
VSSVDGTTHV LTVTVQGSND APVLQAQSQS VTEDGSLLRG QMVAQDADHG DVLRFTTHAA
VGGFALNADG SYSFDPSHHD YQGLTAGQVR DIDIPIVVTD SAGASSIQML SIHITGRNDS
TFIYGVDSGN VQAGVHPQTS GDLHASDDDA GQSGFQAGTV KGSFGSLSID AQGHWTYQVD
GHDSFVQHLL PNSYITEQLT VHSVDGTAHD IEIEVSGAPA GSQLSAPADS ANVQHVALPQ
VWGAVQGQPV AGHDVFAGIL AAVRAGGYQY QGLADELDKG SLAAVGNMDL SITGVHAQVV
DKFGQVVQSI SPTAENAATL HMSDVLLWHA QGHSIIATSD SGFDSTRMWL HNTGDMHNIQ
VILPNGTGFN GWVGEYSLGE LSLSPAIAYP APPASDEQDD EPIQILNFNE VIRNEDSMQS
MTAAGVKAGD EAVIGNNDYP LPLNAATEYK GNLNELSLSS SHGTSGTTPL TTTDAHFAAQ
ASPVDHYLQM LGLSPTAVNL SPSVPVELLP SLSSSDHFND IDAPMYAIPE VNHFENPLLD
NDKEQHKDRH FDLFDVTELH TNPNDDDLLH SALNDMHNQM
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