| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4148 |
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| Symbol | |
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| ID | 1171757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 4308263 |
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| End bp | 4309588 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637345876 |
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| Product | HlyD family secretion protein |
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| Protein accession | NP_719677 |
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| Protein GI | 24375634 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGATC GTCAACTTAA CCATCGTTCT TTGCCAGAAC ACGAGTTCAC TCAAGCCATT
GAAGCACCTG CAGAAAAGCG CATCATCAAA CAAATCACCT ACTTTATTGC GGGTTCAGTG
TTCATTATGT TTGTGTGGTC ACTGTTCACT AATATTGAAG AAATTGCCAA AGCGAAAGGT
CAAGTTATCC CCCTTGGACA TCAACAAGTG ATTCAGAGTT TTTCAGGGGG AACCTTAGCC
TCTATCTTGG TCTCTGAGGG AGATTTAGTG AAAAAAGGCG ATGTTCTCGC CAACTTTATC
GCCATCGATA GCCAAGCTGC CGCTGAAGAA CTGGAAAGTA AACAAGCTAA TCTGGTGCTC
AAAATTGAAC GTTACAGTGC TTTTATCGAA TCCAGAGAGG CCAACTTTGC TAGCTACCTT
GAAAGTCATC CCAATCTTGT GAAAGGACAT ATTAGTGATC TCGAACGGAT GAATAACGAA
AAACAAGCCA TCATTCAATC TTCCCTCGCG GAAATCGCGA AATCGAAAGC CGAGTTGGCA
AGTCTTGATC AAGAAATTCC GCCACTGAAA CATCAAATCA CTTCAGCCCA ACAAACCATC
AATATGATGG AGTCGATCAA AGAATCACAG GCAGTCTCTA AGCTCACTAT GCTGGAATCG
CAACAAAAAT TAGACTCCTA CATACGTGAA CTAAAAAGTA TGGAAGGTAA ACAACAGGTA
TTGGCAAGGG ATATTGAAAA TCTTCAACGG CAGTTGGAGC AAAAACAAGC CACATTGCTA
AAAGAGGTTG GTGAAGCTCG CACAGATGCA CAAGCTGAAT TATTAGGGAT TACCGCACGT
TTAAAATCCT CCGATTCGCA GGTACAACAA AACACCATAA CCTCTCCTGT TGATGGCATT
ATTCAATCCA TTCCGAACAC CTCATCAGGG AGTGTGATTC AACCAGGTGG CACAGTTGCG
GTGATTGTTC CCACCACGCC GACAGCCCTA CTTGAGGCCA AACTCTCCCC TCGGGATATT
GGCTTTGTCA GTGTGGGACA AAAAGCGCGC ATAAAAATTG ATGCCTTTGA TTACAGTCGC
TATGGGGCAC TTGATGGTAT CGTCAAACGC ATCTCCCCAA GCACTGATGC TGATGAAAAA
GGCGGTGTCT TTTATAAAGT ACAAATCTCG ATTGATAAGC CCTACTTTGG CGATCAACCC
GATAAGCTTG AACTGATCCC CGGTATGACA GGTGAAGCGG ATATTGTCAC TGGGGATAAA
ACCGTCTTCC AATACCTGTG GAAACCCGTA TTTACCAATG TGACAGAAGC CTTTGGTGAA
CGCTAG
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| Protein sequence | MNDRQLNHRS LPEHEFTQAI EAPAEKRIIK QITYFIAGSV FIMFVWSLFT NIEEIAKAKG
QVIPLGHQQV IQSFSGGTLA SILVSEGDLV KKGDVLANFI AIDSQAAAEE LESKQANLVL
KIERYSAFIE SREANFASYL ESHPNLVKGH ISDLERMNNE KQAIIQSSLA EIAKSKAELA
SLDQEIPPLK HQITSAQQTI NMMESIKESQ AVSKLTMLES QQKLDSYIRE LKSMEGKQQV
LARDIENLQR QLEQKQATLL KEVGEARTDA QAELLGITAR LKSSDSQVQQ NTITSPVDGI
IQSIPNTSSG SVIQPGGTVA VIVPTTPTAL LEAKLSPRDI GFVSVGQKAR IKIDAFDYSR
YGALDGIVKR ISPSTDADEK GGVFYKVQIS IDKPYFGDQP DKLELIPGMT GEADIVTGDK
TVFQYLWKPV FTNVTEAFGE R
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