Gene SO_4104 details

Gene Information

• Locus tag: SO_4104
• Symbol: mshC
• ID: 1171717
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 4263135
• End bp: 4263608
• Gene Length: 474 bp
• Protein Length: 157 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637345837
• Product: MSHA pilin protein MshC
• Protein accession: NP_719634
• Protein GI: 24375591
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGAAAC AGGCTGGATT TACCTTAGTC GAACTTGTGA CCACCATTAT CCTGATTGGG 
ATTTTGTCGG TGACGGTATT GCCGCGCTTA TTTAGCCAGT CCTCCTATAG TGCCTTTAGT 
CTACGTAATG AATTTATGGC TGAGCTGCGC CAAGTTCAGC AAAAAGCGTT AAATAATACT 
GACAGATGCT TCCGTGTTGC GGTTTCGACT ACGGGTTATC AGGTGAGCCA GTTTGCAAGC 
CGTAATAGTG CTGGTTGCAC AGGTGCGGCA CTGGCACCCA ATCCGTTATA TACCCAAGCC 
TTTCAAGGTG GTGCACAGTT AGTGCTCACT GGCAATAGCG CAAATAGTTT CAATCTTGAT 
TTTGATATTA ATGGTAGACC TTCGCTGGCT TGTAATGGCT CATGCATTAA AGTGATTGCC 
AATGATACTC TGGTCATTAA CATCTCCAGC GAGGGTTATA TTTATGCGAA TTAA 

 

Protein sequence

MAKQAGFTLV ELVTTIILIG ILSVTVLPRL FSQSSYSAFS LRNEFMAELR QVQQKALNNT 
DRCFRVAVST TGYQVSQFAS RNSAGCTGAA LAPNPLYTQA FQGGAQLVLT GNSANSFNLD 
FDINGRPSLA CNGSCIKVIA NDTLVINISS EGYIYAN