Gene SO_4103 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4103 
SymbolmshD 
ID1171716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp4262579 
End bp4263145 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content47% 
IMG OID637345836 
ProductMSHA pilin protein MshD 
Protein accessionNP_719633 
Protein GI24375590 
COG category 
COG ID 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGAATTA ATCCTCGGCT GTTTTCAATG AAAACATCGA TAGATACATC CCCAAACGCC 
GCTCAAAATA CAATCCGGCA ACAGGGTTTT ACCTTAATCG AACTCGTGGT CGGCATGCTG 
GTAATAGCCA TTGCTATTGT GATGCTCAGC AGCATGTTAT TTCCGCAGGC GGATCGCGCG 
GCCAAGACTT TACATCGAGT AAAAAGTGCT GAACTGGCCC ATTCGGTAAT GAATGAAGTC 
TGGGGCAAAC GTTATGACCA AAATACTAAT GCCAATGGCG GTGTGCCCGC CTGTGGGAGT 
CCATTAGGCA GTAGCTGTTC AGCCACATTG GGGCCTGAAG CAGGCGAAGG CCGTAACGAT 
TTTAACGATG TGGACGATTA TCACGGCTTA AGCCAAAACG ACGCTATGCT CAATTCTAGC 
CAAACCTATG CAGAGGCGTA TCCCAACTAT CAACTAAGTG TGACTGTTAC TTATGGGGCC 
GCGCCTAATA CCAAGTTAGT GACCATTAAT GTCACTACCC CGGATAACGA AGTGATCACT 
TACAATCTGG TGAGGAGCAA TTACTAA
 
Protein sequence
MRINPRLFSM KTSIDTSPNA AQNTIRQQGF TLIELVVGML VIAIAIVMLS SMLFPQADRA 
AKTLHRVKSA ELAHSVMNEV WGKRYDQNTN ANGGVPACGS PLGSSCSATL GPEAGEGRND 
FNDVDDYHGL SQNDAMLNSS QTYAEAYPNY QLSVTVTYGA APNTKLVTIN VTTPDNEVIT 
YNLVRSNY