| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4025 |
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| Symbol | |
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| ID | 1171652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 4177259 |
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| End bp | 4181701 |
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| Gene Length | 4443 bp |
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| Protein Length | 1480 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637345772 |
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| Product | OmpA-like transmembrane domain-containing protein |
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| Protein accession | NP_719555 |
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| Protein GI | 24375512 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAACGCCC TCACTGTTTA CGCAGCGGAA GTACTAGATA GCGGCCAAAT CCGTTTTGGT
ACAGGAGCTG AAAACTCCGT CAATACTAAT GGTAACCTAC AACAACCCTT CTACTTCGAT
CAAAGCGCAA ATCAATGGTA TCAACTTACG TTTTCAAACT ATCCATTAGA TAGCGCTATT
GGCGTCGGTG GTGACGGTAC AAATGAATGG AACAATACTG GTACCATAGT AACTAATCCT
GTCTTAACCA ACCAAGCGCT TGATTACTCA GGCTTTACTA AATATAACGG TGATAAGGGT
TACGGTACGA TTGTCTCGGT TGGTACGTTT AGCATCGATG GATTGGAGCT AGAATATAAA
ACCAGCTATA CCCTGCCACA AAATTCCGCC TTTATTAATA TCACCACCCA AATCACCAAC
CGTTCAACGG TGAATGCCAC CAACCTACGT ATGTGGGTTG GTACACGGGA TGATTATGTT
GGGACTCTGG ATCGTCCAAC AAAAAACCGC GGCAACTTAG TCAATGGCGT TTTTACCCAA
TTAGCAGCCA CCTCTGAAAA AGGCAAGGCA CTGCAAATTA TTGGCGGCAA TAGCGGAGTG
TTGTTTTTCT CCCCGTCAAC AAAGGCAAAC GTAGTGCAAC AACGTTGCTG TCAATTTGAA
AATGTAATCA ATCAAGATCC TGCGACTTCA GCAATCGACG CAACAAATGA TGGCTCCTAC
GCGTTTTATG TACGAATGGC AGATCTACGA CCTGGGCAGA GTGAAAGTTT CACCTGGCAC
TATGCCGCAG GTAAAACCTC TGAATTAGCC AATATCGCCA AAAATGTTGC TCAAGCGGCC
GCTATCACCA AAATCATGGT AGAAAATAAT ACTATTCATT TTCAAGCCAT TGATTTCGTA
GACATTAACG GCATTACCCT TGCCAAAATA AAAATTGAAT CATTGCCCAC TAATGGCAGC
TTAACGCTGA ATGGCACAGA AGTCACAGTC AACCAAGAAA TTATCAGTGC TGATTTTGAC
AATTTAATCT ATACCCCTAA TGCAGGTTTC TTCGGCCAAG ACCGCTTTAG CTGGCAAGCC
TTTGTGGGCA ATGCTTACAT CAATGCCCCT TCCTCTATGG ACATTACCGT TGAAGAGGAT
ACTGATAACG ATGGTATTGG TAACAACGTC GACCCTGATG ACGATGGTGA TGGTGTCAAT
GATGCACAGG ATGTGTTCCC ACTCGACTCA ACTGAATGGG TAGATACCGA CAACGACGGT
ATCGGTAACA ATGCCGACAC CGACGATGAC AACGACGGTA TCGGTAACAA TGCCGACACC
GACGATGACA ACGACGGTGT GATTGACGCA CAAGATGCCT TCCCACTAGA CCCTAACGAG
TCAGTTGATA CCGACAAAGA TGGTATTGGT AACAATGCCG ATCCTGATGA TGACGGAGAT
AGTGTCAATG ATGCGCAGGA TGCCTTCCCG CTCGACCCAA ATGAAACGGT CGACACTGAC
AAAGATGGTA TAGGTAACAA TGCCGATCCT GACGATGACA ATGACGGCGT CAAAGATGCA
CAAGATGCCT TCCCACTGGA TCTAGCTGAA TCTATTGATA CCGACAAAGA CGGTATCGGT
AACAATGCCG ATCCAGATGA TGACAATGAC AGCGTCAATG ATGCACAGGA TGTGTTCCCG
CTCGATCCAA ATGAAACTGT CGACACTGAC AAAGACGGTA TCGGTAACAA TGGCGATCCA
GATGATGACG GTGATAGTGT CAATGATGCG CAGGATGCCT TCCCGTTTGA TCCGGCTGAA
TCTGTCGATA CCGACAAAGA CGGTATCGGC AACAATACCG ATCCAGACGA TGACAATGAC
GGCGTCAATG ATGCGCAGGA TGCCTTCCCA CTCGATCCAA ATGAAACGGT CGACACTGAC
AAAGATGGTA TCGGTAATAA CGCCGATCCA GATGATGACG GTGATAGTGT CAATGATGCA
CAGGATGCTT TCCCACTAGA CCCTAACGAG TCTGTTGATA CCGACAAAGA CGGTATCGGT
AACAATGCCG ACGCCGATGA TGATAATGAT GGTATGCCAG ATGCTTGGGA GCTTGAAAAC
GGTCTAAATC CTCTGGATGC AACCGATGCG AACAAGGACC TTGATCAAGA CGGTCGCTCT
AACCTTGATG AGTTTTTACA AAATACCAAT CCTAAAAAGG ACGATGTCGC TCCAGTAGTG
AATGTCCCTG CCAACGTCAG TCTCAATGCC ACCACCTTGT TTACTAAAGT GGATGCTCAG
CTGTTACAGA CTCAAGGAAC GGTCACTGCA AGCGATGCGG GCAATGAGGC TTGTTGTGCC
GTCACCGCGG TAGGCATGGT TGAAGAGGGG TTAATGCTAC GTCCGGGACG TCACATTATC
ACTTGGAAAG CACAGGATGC CGCAGGAAAC ATAGGTAGCG CTGAACAAAT TGTGGATATT
TACCCCACCA TTTCGTTCGG TAAAGATGCC ACTGTGTCAG AAGGTAGAGA CAGCCGCTTT
AAAGTGGTGC TCAATGGCGA TTCACCCACT TATCCGGTTG TCGTTGACTA CACGGTAGGG
GGCAGTGCCG ATAGTGAAGA TCACAATTTA AGCAGTGGTT CGGTCATTAT TGAATCTGGT
GTAGAAGTAC AGGTACCCTT TAGCATTCTG GCAGATCAGG TAAAAGAAGC GGAAGAGCTA
ATTGAACTGA GCTTTGTTGG TGAACAAAAC TGGGGGGTTA AAAACACCCA CAAGACCCGC
ATCGTCGAAA CCAATGTTGC ACCAGAACTC ACGCTTATCG CGAAGCAAAA TCATCAGCAA
GTCACCAGTA TTGCAAAAGA TGCAGGCCTA GTCGAACTGG CACTGAGCAT CCTTGATGAT
AATAGCAAGC ACGATATTCG CTGGCTGTTA CCAGAAGGCG TCACCGCGGA CATCAGTGAA
ACTAAACAAC TGCTAAGCTT CGATCCTTCA CAGTTAAAGG CAAACATGCT TAGCCTGTCT
GCCACTGTGA TCGATAATGG CTCACCCGCC CAAACTGCTG AGATCAATAT CCTGCTCAAG
GTGTTAGCAA CAACACCCGA ATTAGCGGAA CGCGATACCG ACAGTGATGG CTTAAGCGAT
CGCGAAGAAG GGTTAACAGA TACGGATCAG GATGGTATTC CAGACTATTT GGATAACATC
GACGAAACCC ATCTGCTGCC TGAGCGTGGC TTATCCACTA ATGCCTATAT CATTGAAGCT
GACGCCGGCG TAAAACTTAC CCTAGGTCAA GTCTCGATGA GCAGCGCCTT TGACGGTGCT
GAAGTCACAC CAAATGACTT TAAAATCTCA AAACTGACTG TGGATGACGT GCCGAATAAG
GGAGGATATT TTGATTTTAT CGTCAGTAAC CTTCCAGAAA TGGGTCAATC GGTGAATGTG
GTTCTGCCTC AGCGAGAAGC CATTCCAAGC CGTGCAGTTT ACCGTAAATA TGTCGAAGGC
AAAGGTTGGT TTAACTTTGT TGAAGACACC AATAACCATT TAAGCTCAGC GAAAGGAGAA
CAGGGTTACT GCCCTGCGCC AGGATCTGAC GCCTTTAAAC CGGGCTTAAA AGAAGGTGAT
TGGTGCGTGC AGCTTACCAT CAAAGATGGT GGACCGAACG ATAGCGATAG TAAAGTGAAC
GGTACGGTCA AAGATCCGGG CGGTATTGGA CAACCCATAA TGCATGAGGT TGAAGTGACA
ACAAATGGTA GTGGTAGCAT GGGCTTAGGT ATGGTGTTGT TAATGGGATT CATGGCGGGC
GTAAGACGCT TTGGTCGTCG AATCACTGGC TTACTTGCAT TACTGGGACT CAGTTTTGGC
GCTAACGCGG TAGAGTTTAA TGCTGACAAT CTGTATCTGC AGCTAGGTGC CGGACAAGGC
CATTCCAGTG TCGAGCGCAG TGATATTGCA GCAGAACTCA CCAAAATTTC TGATACCATC
AAGGTGACTG ACTTTGATGA CACATCAAAG AGTTACTGGT TCGAGCTAGG CTACAAAATC
CATCCTAACT GGGGGATTGA GCTGGGCTAT GTCGACCTTG GCAATGTCTC GGTGAGTTTT
ACAGGCCAAG TCGATCAACT CGAAGTGGAA TCTTACTTGG ATAAAGTGAG CCTGAGTCAT
CCTGATAGTG CATCGGGTGC CAGTATTGGT ATGAGTTACT TCTATCCACT CATGGACAAG
TTAGTACTCA GTGGCAGAGC GGGTGCATTC TTTTGGGAAG GTGATTACAG CACACTACTC
AAAATCAAAG AGGGTGCCTT TAGCTATCAA CACCAAAGCC AAAACGGTAC CGATTTGTAT
GTCGGTATGG GACTTGATTA TCTCCCCGCT GAACACTGGG CCATCGGCCT AGCACTGCGC
AGCTACCGCT TGGACGGCTA TCATACCGAT GTAGTTGCCT TATCCGTGGG CTTTGATTTT
TAA
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| Protein sequence | MNALTVYAAE VLDSGQIRFG TGAENSVNTN GNLQQPFYFD QSANQWYQLT FSNYPLDSAI
GVGGDGTNEW NNTGTIVTNP VLTNQALDYS GFTKYNGDKG YGTIVSVGTF SIDGLELEYK
TSYTLPQNSA FINITTQITN RSTVNATNLR MWVGTRDDYV GTLDRPTKNR GNLVNGVFTQ
LAATSEKGKA LQIIGGNSGV LFFSPSTKAN VVQQRCCQFE NVINQDPATS AIDATNDGSY
AFYVRMADLR PGQSESFTWH YAAGKTSELA NIAKNVAQAA AITKIMVENN TIHFQAIDFV
DINGITLAKI KIESLPTNGS LTLNGTEVTV NQEIISADFD NLIYTPNAGF FGQDRFSWQA
FVGNAYINAP SSMDITVEED TDNDGIGNNV DPDDDGDGVN DAQDVFPLDS TEWVDTDNDG
IGNNADTDDD NDGIGNNADT DDDNDGVIDA QDAFPLDPNE SVDTDKDGIG NNADPDDDGD
SVNDAQDAFP LDPNETVDTD KDGIGNNADP DDDNDGVKDA QDAFPLDLAE SIDTDKDGIG
NNADPDDDND SVNDAQDVFP LDPNETVDTD KDGIGNNGDP DDDGDSVNDA QDAFPFDPAE
SVDTDKDGIG NNTDPDDDND GVNDAQDAFP LDPNETVDTD KDGIGNNADP DDDGDSVNDA
QDAFPLDPNE SVDTDKDGIG NNADADDDND GMPDAWELEN GLNPLDATDA NKDLDQDGRS
NLDEFLQNTN PKKDDVAPVV NVPANVSLNA TTLFTKVDAQ LLQTQGTVTA SDAGNEACCA
VTAVGMVEEG LMLRPGRHII TWKAQDAAGN IGSAEQIVDI YPTISFGKDA TVSEGRDSRF
KVVLNGDSPT YPVVVDYTVG GSADSEDHNL SSGSVIIESG VEVQVPFSIL ADQVKEAEEL
IELSFVGEQN WGVKNTHKTR IVETNVAPEL TLIAKQNHQQ VTSIAKDAGL VELALSILDD
NSKHDIRWLL PEGVTADISE TKQLLSFDPS QLKANMLSLS ATVIDNGSPA QTAEINILLK
VLATTPELAE RDTDSDGLSD REEGLTDTDQ DGIPDYLDNI DETHLLPERG LSTNAYIIEA
DAGVKLTLGQ VSMSSAFDGA EVTPNDFKIS KLTVDDVPNK GGYFDFIVSN LPEMGQSVNV
VLPQREAIPS RAVYRKYVEG KGWFNFVEDT NNHLSSAKGE QGYCPAPGSD AFKPGLKEGD
WCVQLTIKDG GPNDSDSKVN GTVKDPGGIG QPIMHEVEVT TNGSGSMGLG MVLLMGFMAG
VRRFGRRITG LLALLGLSFG ANAVEFNADN LYLQLGAGQG HSSVERSDIA AELTKISDTI
KVTDFDDTSK SYWFELGYKI HPNWGIELGY VDLGNVSVSF TGQVDQLEVE SYLDKVSLSH
PDSASGASIG MSYFYPLMDK LVLSGRAGAF FWEGDYSTLL KIKEGAFSYQ HQSQNGTDLY
VGMGLDYLPA EHWAIGLALR SYRLDGYHTD VVALSVGFDF
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