| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4014 |
|---|
| Symbol | |
|---|
| ID | 1171641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 4157011 |
|---|
| End bp | 4160082 |
|---|
| Gene Length | 3072 bp |
|---|
| Protein Length | 1023 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637345761 |
|---|
| Product | AcrB/AcrD/AcrF family protein |
|---|
| Protein accession | NP_719544 |
|---|
| Protein GI | 24375501 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTAC CCGAAGTCTG TATTCGTCAT CCTATCTTTG CCAGCGTACT CAGCATAATG
GCTGTGTTAC TGGGATTGAT TGCCTTTCAA AAACTCGATA TCCAATATTT TCCTGAGCAT
ACGACTCACT CGGCCTCAGT AAATGCCTCG ATTGCTGGGG CGAGCGCGGA CTTTATGTCG
AGCAATGTGG CTGATAAGTT GATTGCGGCA GCTTCGGGCA TAGATAAAGT CGATACCATG
TCGACCGACT GTAGCGAGGG GCGCTGCTCA TTAACGATTA AGTTCAATGA CGACACCAGC
GATATTGAAT ACACCAACTT AATGAACAAG TTGCGCAGTA GCATTGAAGG AATTAACGAC
TTTCCCCAGA GCATGATAGA TAAGCCGACG GTCACCGACG ATACCTCGGC CACGGATTCG
GCCAGTAATA TCATCACCTT TGTGAACTCG GGCGGCATGG AAAAGCAGGC CATGTATGAC
TACATTAGCC AGCAGTTGGT GCCGCAACTT AAACAAGTGC AAGGCGTTGG TGCGGTTTGG
GGGCCCTATG GCGGCTCACA AAAGGCGGTT AGAGTCTGGC TTAATCCTGA ACAAATGAAG
GCGTTAAATA TTAAGGCCGC CGATGTGGTG GGGACGTTAG GTTCCTACAA TGCCAGTTTT
ACCTCGGGGG CGATTAAAGG TAAATCACGG GACTTTTCGA TTAATCCTTT GAATCAAGTT
GAAACCCTTG AGGATGTGAA GGATCTGGTG ATTAAAGTCA GCGAGGGCAA AATCATCCGC
ATCGCTGATG TTGCTCAGGT GGTCATGGGT GAGGAAAGCC TATCACCGAG CATGCTGTCT
ATCAGTAGAC ATAGTGCAAT GTCACTGCAG ATTTTACCGC TGAGTAACGC CAATCCGGTG
AAAGTGGCTT CAAACATTAA AGCCGAAATT GCGCGGATGC AAAAACACTT ACCCCAAGGC
TTAGAAATGC ACTTGGCGTA CAATCAGGCA GATTTTATTG AAGCGGCCAT TCATGAAGGC
TTTGCTGCCT TGATTGAAGC GGTGATCTTG GTCTCGCTGA TTGTGGTGCT GTTTTTAGGG
AGTTTACGGG CGGCATCTAT TCCGATTATT ACCATTCCTG TGTGCGTGGT TGGGGTGTTT
GCGGTGATGT CGGCGCTCGG TTTTAGTATC AATGTGCTCA CCATCTTGGC GATTATTTTG
GCTATTGGCC TGGTGGTCGA CGATGCCATT GTGGTGGTCG AGAACTGCTA TCGCCATATC
GAAAACGGTG AAACGCCATT TAATGCGGCG ATTAAGGGCT GTCAGGAGAT CATCTTCCCG
ATTATTGCCA TGACCTTAAC GCTCGCCGCC GTTTATTTGC CGATTGGCTT AATGTCGGGC
TTAACCGCCG ATCTGTTTCG GCAATTCTCC TTTACCTTAG CCGCAGCCGT GATGATCTCC
GGTGTGGTGG CGTTGACCTT ATCGCCGATG ATGAGTGCGT ATCTTATCAA TACCACTGAA
CAACATCCTC GCTGGTTTAG CCGAGTAGAG GTGCAACTTC AGCAGTTAAA TCATTTGTAT
ATTAATGAGC TGAATAAATG GTTTGTGCGT AAACGTTTGA TGTTTGGCGT GGCAGTTGTG
CTGGTTGGCC TTGCGGGGAT TGCGTATTGG CAGTTGCCGA AAATACTTTT GCCTGCGGAG
GATTCAGGCT TTATCGACGT GACGGCCAAT GGCCCAACAG GCGTGGGGCG CCAGTATCAT
TTGGACCATA ATCGCGAGCT AAACAGTGTG ATTGACGGCC ATCCTGCGGT TGGGGCAAAC
CTATCTTATA TCGAGGGAGA GCCAATCAAC CATGTGCTGC TCAAGCCTTG GGGCGAGCGT
AGTGAAGGGA TTGATGAGGT GATCGAAGAT TTGATCGCTA AATCGAAGCA GAGCGTCTCT
GCTTATAATA TGTCCTTTAG TATCCGCTCG GCGGATAACC TTAATATTGC CAATAATTTA
CGTTTAGAGC TGACGACCTT AGATCGCAAT AAGGATGAGC TGAGCCAAAC CGCTGCTAAA
GTGCAAAAAT TACTCGAGGA TTATCCCGGC CTGACCAATG TGGGTAACTC AGTGCTGAGG
GACCAACTGC GCTACGATCT GTCTATCGAT CGCAATGCCA TTATCCTTTC TGGTGTGAGT
TATGGTGATG TGACTAATGC CCTGTCGACC TTCCTTGGCT CTGTGAAAGC GGCCGACTTA
CATGCTACCG ATGGCTTTAC TTATCCGATT CAAGTGCAAG TAAATTTAGA TAAGCTCAGT
GATTTCAAAG TATTGAATAA ATTGTATGTT ACTTCTGAAT CAGGGCAAGC ACTGCCGTTA
TCGCAATTTG TGTCGATTAA GCAGACCACG GCGGAATCTA ATATTAAAAC CTTTATGGGG
CTTGATAGCG CGGAGCTAAC GGCAGATCTG ATGCCCGGTT ATTCCACCGA TGAAATCAAA
GCCTACTTAG ACGAGCAACT GCCGAGCCTG CTAAATGATG CCCAAGGCTT TAAATATAAT
GGCGTTGTCA AAGAGTTAAT GGATTCGCAG GCGGGTACTC AATCATTATT TTTGCTGGCG
TTGGTGTTTA TCTATTTGAT TTTAGCTGCG CAGTTTGAAA GTTTTGTCGA TCCTCTCATC
ATCTTACTCA CCGTACCTTT GTGTATTGTT GGCGCGCTGC TGACCTTAGC GGTATTTGGG
CAAAGTATAA ATATCTACTC ACAGATCGGC TTATTAACCT TAGTGGGGCT AGTGACTAAG
CACGGTATCT TGCTGGTGGA GTTTGCCAAT AAGCAGCAGG CTCAGGGGAT GAGTGCGATT
GAGGCGGCGC TGAGCAGTGC CAAATGGCGG TTAAGACCGA TCCTTATGAC CTCGTTAACC
ATGATTTTAA GTGCTATTCC GTTGGCGCTA GCGACTGGGC CTGGCTCGTT AGGCTTAGCC
AATATTGGTT TAGTGTTAGT CGGCGGTTTG CTCGCGGGAA CCTTTTTCTC GTTATTTGTG
GTACCAGTTG CCTATGTGGC AATGTCAGAG TTAAAGGCAA GGGATGTAGT TGCGCATTTG
CGCTCGGCGT GA
|
|---|
| Protein sequence | MRLPEVCIRH PIFASVLSIM AVLLGLIAFQ KLDIQYFPEH TTHSASVNAS IAGASADFMS
SNVADKLIAA ASGIDKVDTM STDCSEGRCS LTIKFNDDTS DIEYTNLMNK LRSSIEGIND
FPQSMIDKPT VTDDTSATDS ASNIITFVNS GGMEKQAMYD YISQQLVPQL KQVQGVGAVW
GPYGGSQKAV RVWLNPEQMK ALNIKAADVV GTLGSYNASF TSGAIKGKSR DFSINPLNQV
ETLEDVKDLV IKVSEGKIIR IADVAQVVMG EESLSPSMLS ISRHSAMSLQ ILPLSNANPV
KVASNIKAEI ARMQKHLPQG LEMHLAYNQA DFIEAAIHEG FAALIEAVIL VSLIVVLFLG
SLRAASIPII TIPVCVVGVF AVMSALGFSI NVLTILAIIL AIGLVVDDAI VVVENCYRHI
ENGETPFNAA IKGCQEIIFP IIAMTLTLAA VYLPIGLMSG LTADLFRQFS FTLAAAVMIS
GVVALTLSPM MSAYLINTTE QHPRWFSRVE VQLQQLNHLY INELNKWFVR KRLMFGVAVV
LVGLAGIAYW QLPKILLPAE DSGFIDVTAN GPTGVGRQYH LDHNRELNSV IDGHPAVGAN
LSYIEGEPIN HVLLKPWGER SEGIDEVIED LIAKSKQSVS AYNMSFSIRS ADNLNIANNL
RLELTTLDRN KDELSQTAAK VQKLLEDYPG LTNVGNSVLR DQLRYDLSID RNAIILSGVS
YGDVTNALST FLGSVKAADL HATDGFTYPI QVQVNLDKLS DFKVLNKLYV TSESGQALPL
SQFVSIKQTT AESNIKTFMG LDSAELTADL MPGYSTDEIK AYLDEQLPSL LNDAQGFKYN
GVVKELMDSQ AGTQSLFLLA LVFIYLILAA QFESFVDPLI ILLTVPLCIV GALLTLAVFG
QSINIYSQIG LLTLVGLVTK HGILLVEFAN KQQAQGMSAI EAALSSAKWR LRPILMTSLT
MILSAIPLAL ATGPGSLGLA NIGLVLVGGL LAGTFFSLFV VPVAYVAMSE LKARDVVAHL
RSA
|
|---|
| |