| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4008 |
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| Symbol | |
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| ID | 1171636 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4149700 |
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| End bp | 4153350 |
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| Gene Length | 3651 bp |
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| Protein Length | 1216 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637345756 |
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| Product | hypothetical protein |
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| Protein accession | NP_719538 |
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| Protein GI | 24375495 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTGATTG ATACGCACCT TCCGGGCGTT GTGGAACTCG CCCTCAATGG CCATACCAAT
ATTTGTGGTA CTAACGCTTC GGGTAAAACC ACGCTGCAAC GTTTAGTGCC AGTATTTTAT
GGCGAATATC CTAGCCGCGT GGTGCCTTCA ACCCGCGATA GTTTCGAGCG TTGGTACTTG
CCACACGATT CAAGCTACAT CATTTACGAA TACCAAAAGG CCGATGGCTT GCTCTATCAA
GCCGTGCTGG CGTCGGCGGG CGATGGCAAA GGCGTGAACT ACCGCTTTAT CGCTAAAGGT
TTTGAGTTAA GCGATTATAT TAAATCGCAA AATGGTGACA CTATTTTGTG CCACACCATG
GCGGAACTGG GCCGCGATTT AAAACGTCAA GGTATTGCCA CCACCAACTT GCTCAACACC
CGCGAATACC GCGCCATTAT CCAAAACGAT CGCACCCTGT TAAGCACGGG TAGCAACCGC
AGCGAACTGC GAGCCTATGC GCGCCAATTT GCCCTGTGTG ACGGCGAGCA TTCACTGCGC
CATATCGAGA AACTCGCTAA AGCCGTCCAC TCCAAAGAAG GCAAAATGGA AACGGTCAAA
TCGATGATCG CCGCCATTTT GGAAGAAGAT GGAGTAAATC CCCCCAGCTC GCGCTTAAAC
CCACAACGTG TTGAGGCGTG GATCCGCGAA AGCCAGCTTA TCCAAGGCTT TGAAGTCATC
CGCCCCGAGT TTGAAAAACT CGAACAGGAA TTTAACCAAC TGCTCAGCGC CGAAATGCGC
CTATCGAGTC TGTCCCGTGG TTATCGCAAT GACGAAAGCC TAGAGGCCGA CCGTTTAGAG
ATCCAACAAA CCCTATCTAA GGAGCTGAAT TTAAAGCTTC GAATGTTGGA CGACGAATGG
AAAGAAGTGC GTGACGAGCT TAACCTCGAC TTATCCGCCG CCAAGGGTGA CGTAGCTAAG
TGCGAGTACG AGTTAGATGC CATTGAAGAT CAGCACGGCG CCTTTTTAGA TGCCAATATC
GAGCAAGCTA AGGCCGATTT GGACATGCTG CCAAACTGGC GCGCGGACAT GGAAAACCTC
AGCGAGCGCC ATAAGTTACA AACTGAAAAA CACCAAGATA TTGAAGCGGC TTACAATGCC
CGTCGCAGCA AAATTGGCGA GCAGTTAAAC CGCGAGCTTG AAGGTTTACA TAGCGAACAG
GATAAACAGC GCGAAGCGCG CGATAAGCAA CGCGAAGTCG CCCGTGGCGA TCTCGATGCC
CTTGAAGCCC AATGGCGCAG CCAAATGGAT GCGGGTAAGG CCAGCTTTAG CGAGCAGGAA
TACCAATTCA AACTTAATGC TGCCGAGCTT AAGTTACGTG TCGATGGCGT AACCTACACC
GAGGAAGAAA AGTTAAACCT CGCGATCTTC GATGAGCGCA TTCACCGCGC CGACGAAGAG
CAGGAAAGCT GCAATGCCAA GGTTGAGCGC TTAACTAGCG ATGAGCGTAA GCTGCGCGCC
AAACGCGACC AAGCCAACGA AGCACTGCGT ATCGCCAGCC TGCGGGTTAA CGAGCGGCAA
ACGGCGCTCG ATGAACTGCA CCATATGCTG TTCCCGCAGT CCCATACCTT GCTCGAGTTC
CTGCGTAAAG AAGCCCAAGG TTGGGAGCAG AGTCTGGGTA AAGTGATTGC GCCAGAGTTA
CTGCATCGCA CCGATTTACA CCCAAGTGTC ACAGGTGAGA GCGACACTGT GTTTGGGGTG
AATTTAGATC TCAAAGCCAT TGATGTGCCT GAATATGCCG CCTCCGAGCA GGAGCTGCGT
ATTCGCTTGA GCAAGGCCGA AGAAGCGCTG CAAAGCGCGC AGGAATTACA GGCCGAGGCC
GAATCACAGC TGGTGGCGAT TAACGGTGAG CTGGATAAAC TCAGCCGTGA ACTGACCTTT
GCCCGCACGG CTTACAAGAA TAGCCGCGAT GATTTACGTC GTCTGTTCGA TGAAAAACGC
AGTGAGCAGG ACAAGATCAA CAAGGCGCTG GCCGAGCGTA AAGCCTTTGC CCAGCAGCGC
TTAACTCAAC TCGATGGCGA GTTAAAGCAG CTTAAACATC AACATCAGCT CTGGCTCGAA
GAGCAAAAAG AGCAGGCGCT CGAAGCGCGG ATGGAAAAAC AAGCCTACTG GCAGGAAGTG
ATTGGCGCGC TCGACAATCA ACTCGGGCAA ATCAAGGCGA CTATCGATGC CCGCCGCGAA
AGTGCTAAGG CCGAGCAAAA AGCCTGTGAA ACCTGGTACA AAAACGAGCT TAAATCCCGC
GGTGTGGATG AGGACAATAT CCTTAAACTC AAGCAACAAA TCCGTGAGCT TGAGACCAAG
ATCAGCCGCG CCGAGCAGCG CCGCAGCGAA GTATTGCGCT TCGACGATTG GTATCAACAC
ACTTGGCTTA TCCGTAAGCC TAAGTTGCAA ACCCAGTTAA GCGACGTTAA ACGCGCCGCC
TCGGAAATCG ATCAGCAGCT TAAAGCCAAG ACCCAAGAGG TGAAGACTCG TCGTCAACAA
CTCGAGACCG AGCGTAAGGC CTCGGATGCG GCGCAAATTG AAGCCTCTGA AAACTTAACC
AAACTGCGCG CAGTGATGCG TAAGTTGGCC GAGCTGAAAT TGCCCGCCAA CAATGAAGAA
GCCCAAGGTA GCCTCGGCGA GCGTTTGCGT CAGGGCGAAG ATTTACTACT AAAACGCGAT
TATCTGATGG GCTCGGTTAA GCAATATGTG GAGCATTTCG ACTCTGTGAT TGCCAGCAAG
TCAGGTTCAG GCTTAGCCGA AACCTGGGAG CGTGCCCGCG AAGAGTCGAG CTTTATCAAC
GACAAAGGAA TTCGCCTGCT GGATTACCGC AAGCTAGTGC CGCAGCTTGA ACAGCTACTC
AATGTGATTG TGCCGCAATC GATTATGGCG CTGCGTGAGC AGGGGCGGAT CTTCGGTGTC
GATTTAACCG CCTTCTACGA TGTGCTTGCC GATATAGATC GTCGTATCGC TTCGCAAAGT
GCGCGTATTA CCCGCGAAGT GGGCGAGGAG TTATTCCTCG ATGGCGTATC GGAATCTGCG
GTCCGCATTC GCTCTAAGAT CAGCGAATTA GAGTTTTGGC CCGAGCTTGA GCAGTTTGTT
AAAGCCTTCA AAAATTGGAA AGCCGACGGC TTTAATGGCC TGCCCGATGA GGAATACACC
AACAGCATGC GCCGCGCCTT AGACATTATT GGCCGCGCGG CCTTAACTGG CGGCATTTCT
AAGCTGCTTG AAATCGAGCT GCGCCTCAAA GAGGGTAACA GCGACCTGAT TATCCGCACC
GACAGACAGC TAAACGAATC ATCAAGCCAC GGTATGGCTT ACCTGATTTT ATGTAAGTTT
CTGTTGGCAT TCACGCGCTT GCTACGTGGC CGCGCCGATG TAACCATCCA CTGGCCAATT
GACGAGCTGG GTACGCTGCA CCACACCAAC GTGAAGAAGA TTTTCGATGC TTGTGGCAAT
AACAATATCA GCGTGTTAGG CGCCTTCCCG AACCCAGAGT CAGAAGTGCT GAACCTGTTC
GTGAACCGTT ACATTATTAA TAAACAAACT AAGAAGTTGC AGGTAGTGAA GCCCAAAGCC
AATCCGATCG CCGATTTGTT GAGTAAACGC CTGAGCAAGG AGGCCATCTA A
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| Protein sequence | MLIDTHLPGV VELALNGHTN ICGTNASGKT TLQRLVPVFY GEYPSRVVPS TRDSFERWYL
PHDSSYIIYE YQKADGLLYQ AVLASAGDGK GVNYRFIAKG FELSDYIKSQ NGDTILCHTM
AELGRDLKRQ GIATTNLLNT REYRAIIQND RTLLSTGSNR SELRAYARQF ALCDGEHSLR
HIEKLAKAVH SKEGKMETVK SMIAAILEED GVNPPSSRLN PQRVEAWIRE SQLIQGFEVI
RPEFEKLEQE FNQLLSAEMR LSSLSRGYRN DESLEADRLE IQQTLSKELN LKLRMLDDEW
KEVRDELNLD LSAAKGDVAK CEYELDAIED QHGAFLDANI EQAKADLDML PNWRADMENL
SERHKLQTEK HQDIEAAYNA RRSKIGEQLN RELEGLHSEQ DKQREARDKQ REVARGDLDA
LEAQWRSQMD AGKASFSEQE YQFKLNAAEL KLRVDGVTYT EEEKLNLAIF DERIHRADEE
QESCNAKVER LTSDERKLRA KRDQANEALR IASLRVNERQ TALDELHHML FPQSHTLLEF
LRKEAQGWEQ SLGKVIAPEL LHRTDLHPSV TGESDTVFGV NLDLKAIDVP EYAASEQELR
IRLSKAEEAL QSAQELQAEA ESQLVAINGE LDKLSRELTF ARTAYKNSRD DLRRLFDEKR
SEQDKINKAL AERKAFAQQR LTQLDGELKQ LKHQHQLWLE EQKEQALEAR MEKQAYWQEV
IGALDNQLGQ IKATIDARRE SAKAEQKACE TWYKNELKSR GVDEDNILKL KQQIRELETK
ISRAEQRRSE VLRFDDWYQH TWLIRKPKLQ TQLSDVKRAA SEIDQQLKAK TQEVKTRRQQ
LETERKASDA AQIEASENLT KLRAVMRKLA ELKLPANNEE AQGSLGERLR QGEDLLLKRD
YLMGSVKQYV EHFDSVIASK SGSGLAETWE RAREESSFIN DKGIRLLDYR KLVPQLEQLL
NVIVPQSIMA LREQGRIFGV DLTAFYDVLA DIDRRIASQS ARITREVGEE LFLDGVSESA
VRIRSKISEL EFWPELEQFV KAFKNWKADG FNGLPDEEYT NSMRRALDII GRAALTGGIS
KLLEIELRLK EGNSDLIIRT DRQLNESSSH GMAYLILCKF LLAFTRLLRG RADVTIHWPI
DELGTLHHTN VKKIFDACGN NNISVLGAFP NPESEVLNLF VNRYIINKQT KKLQVVKPKA
NPIADLLSKR LSKEAI
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