| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4002 |
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| Symbol | |
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| ID | 1171630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4138683 |
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| End bp | 4143752 |
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| Gene Length | 5070 bp |
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| Protein Length | 1689 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637345750 |
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| Product | sensory transduction histidine kinase |
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| Protein accession | NP_719532 |
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| Protein GI | 24375489 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGGAT ATGGCCTAAT CAGCCTAGCC ATTTTGATGA TTTTGAGTGC CTTTAAGCTT
GTGAACATGA GGACAAGGTA TTTGGCTCAG TTACCGCTGC AAAGCAACGT GCTATGGCGT
TTATTTCCTA TTCTATTTGC TTTTCTTTTT AGTAGCTTAT CTGTTTTAGC CTCACCAGGG
GGACAAATAC CGCTGACAAC GGCGGTCATT GATCGTGTTA GCGCACCGAC TCCCGTTTTA
CGCGTCAGCA TGATTTTGTC TGTAGATACG CCTTTTAATC GACAAATAGG AGCGCGAGCG
CAGGCTGCTG CGGTGGATTT AAATATCCAA TTACAGGTGT TGTACGCCGA TGGCACCCAT
GATGGGTTAA TGACCCTAGG TCGCGAGGTC ATGAACCAAG GGATCGATGG CTTGATATTT
TCCCCCGTTG ACGATTTTGG TGAGGCGTTA ATCCGTGAAG CACAAAAGCT TAAGATCCCC
GTAGTGACCT TAAGGGCTAA ATTAGACATG CTCAGTTCAG CAGCGTTAGC CGAACTGCCC
AATTTCATTG CTAATGTGAA TATCAATGAC CAAAAATCTG GGCAATTATT GATGCACTAC
TTGCTTTCTG TCGATCAACT TAATCGAGAT GTGCCAGCTG TTTTGTTAAT TGCAGGTCCT
CAGGGATATC CCAATGTTGA GCGAGGAGTC GAGGATGTTC AGCGTTTTAT GAATTCCTTG
TCAACGAGGG GAACGCTGAA AATCGCATAC ACCGATTGGA GTGTTGAGCA AGCGTTAGCG
CAGTTTGACA GTGCTATCGC AGCGCAACCA GCATTGACTA CCGTAGTCAC TATGAACGCT
TCGGCGGCGG TAGCTGTGGC CGCAAAAGCA CATCAGCAGT TAGGGGCGAA TGCCCCCGCT
ATTGGTTCAA TGATATGGTC TGAGTCGCTT GTGCAGGACA TCAAACAGGG GAAAATTCAG
GCGGCAATTA CGGGGAGTGA ATTTTCTGGA GCGATTGCGT TATCGATTTT GTTTGATCAT
TTATCTGCCC GTGGTGGCCC GTCCAGAAAA GGCAGTTTTG TCGCCCCCTT GGTGGTGATC
ACGCCTAATA ATTATCAAGA CTATGAATCA ATTCTTGATT TTGACCCACT GCGCCTCAAT
TTTCGGCAAA TCTCGCAGCA CTTTAATCCT GATCTGTCGA TCAACGAATT ACGCCTTGCG
GATCTATTGA CCAGTGAGGC GCGAGTTAAT TTTTTGAAAA CTTTGACAGA GCCTGAGTTG
AATTTTCTAA GGCAACATCC GTCGATCCGG GTGGGGATTG AGCCCGACGG CGCACCAATC
GATTATGTTG ACCAAGCAGG TAAGCATACA GGCTTGATTG CCAGTTATTT ATCGGAAATT
GCCAAACTTA TTCCCGTCAG GTTTGAGGTT CAACCGACCC AATCTTGGGG GCAAACGCTT
AAAGATTTTG CTGCGGATAA ACTCGATATG ATTTCGCTGA TCTCGGCCAG TGAAGATCGC
AAGCAGCGTA TATTGTTCAC CGATGCAATC GGGCATTTCC CCGCCGTGAT TGTGATGAGA
AAAGATGCTG AATTAGTCGA TGGGATAGAA GGATTATTCG GTAAAACGGT AGCTGTAACC
CGCGGTGATA TTACCGAAGA ATTGTTACGT AAAAAGTATC CGGAAATCAA TATCATCGCT
TTTGATCGGT TAGAAGATGT GCTGTCGACC ACCTTAGCGT CACAGGTGGA TGCTGCGGTG
ATGCTATTGC CCAAGGCCGG GCAATCGCTG TTATCTCCTG CCAACAAAGA ACTCACTATT
GTTGCGCCAC TGGACGATGA ATTTGAACAC TCTATTGGGG TTCGCAGGGA TTGGCCAGAA
TTACAAAGCA TTCTGAATAA AGCGTTAGCG CAAATCCCTA GCAGCACTCG CGCTGAATTG
GATAGTCGTT GGTTTACAGT CAAATATGAT TTTGGCATGG ACCCTCAGCA GATAAAACGC
TGGGCCATTA GCTCGGCAAT GGTCATTTTA GGATTGTTTG CTTGTTTTAT CTTATGGAAT
TACGGACTTA AGCGTGAGTT GCTGAGGCGG AGTCGAATGG CTGCTCAGCT CGAATCAAGC
ATGAATAAGT TTCATGCGTT GTTTGATTCC GTGATGGATG CCTGTGTGAT TATTGATAAA
CGCGGGGTGA TTAAGGAATG TAATGCGGCT TTGCAAACCT TGCTAGGGGT GGAAGATAAG
ACCGCTTTGG TGGGCACCTC TCTGACACAA TTTCATCTCG CAGATACCTT TATGGGCTCT
GCTGTGCAAA TAGCACAGAG CGTAGAAGAT GTACTCAAAC AAGGGTTGCT TAAATTTGAG
GCGGATATTA CCGACAGTCA GGGTCAATCC ATTCCCGCTG AAGTGACACT CAAGTCGATA
GAATTAAACA CCGAGCGGTT TGTGCTCGCC ACTTATCACA ATTTGGCCGA GCGCCGCTTG
GTGGATCGCC TCATTCGCCA TGAGCGAAAC CTGCTCAAGA ATGTGTTGGG GATGAGCCCT
ATTGGGGTCT GGGTTTGTGT TAATGGCACT TGCCGTTATG TGAATGCGCA AATGACATTG
ATGACTGGCC TAGAAGTTGA GCATGCTGTA GCTGACATTT TTCTCCAGCC TAAGGATTAT
TGGCACTATA TTCGAGAGCT CGCCCCTGAG CAGGAATGTA TTACATTTGA GTCCAAACTA
AAGGGATATC ATGGCCAGAT ACTCGATGTA TTGTTTACCG CGTATCCGAC ATTCTATGAT
GGCCAGCACG CTAATTTGTG CTGGGCCTTA GATATTACTC AAGAGAAGGC CATTCAAGCT
GAGTTGGCTA GCGCTAAGTT ACAGGCGGAT GCGGCAAATC GCGCAAAGTC AGACTTTTTA
GCGAATATGT CCCACGAAAT CCGCACGCCA ATGAATGCCA TTATCGGTAT GTCTTATCTG
GCATTGCAAA CGGATTTAGC TGAAAAAAGA AAGGATTATA TTGCTAAGGT GCATCAGGCC
GCTGGCTCAC TGCTCAATAT CATTAACGAT ATTTTGGATT TTTCGAAAAT CGAAGCCAAT
AAACTCACTG TAGAACACAT CGAGTTTGAC CTTGATGAGG TGTTGACTCA GTTGAACAAT
GTGATTGGTT TTAAGGTTGA AGAAAATAGC ATGCGCTTAA TTTATGACAT CGCTACCGAT
TGTCCCCGCT ATTTTATTGG TGATCCGCAG CGCCTAGGGC AGATTTTACT GAACTACTGC
AACAATGCGG TGAAATTCTC TCCCAAGGGC AGTGATATTT TACTCAGTTG CCAAGCTGAG
CTTGATAAGC AAGGCGCTAC GCTGACCTTT TGTGTGGCTG ATGATGGCAT CGGTATTCCC
CTAGATAAAC AGGCACGACT ATTCCACTCG TTTGAACAAG GCGATACATC GACTTCCCGC
AAATATGGTG GAACGGGTTT AGGGTTAGCA ATCTGTAAAC GCCTGAGTGA ATTAATGCAA
GGGGAGGTAT GGTGTGAAAG TGAGTTAGGG CAAGGGTCGC GTTTTTATTT GCGCCTGCAT
TTGCCCTTGG TCAAGCCCTA TGATTTGTCG ACACAATTTG CCGCGCTTCA AGGAGAAAGC
CTTTCTATAG TCGGGTTTAT GCCGGACTTG AGCGCGATTT ATAGTCGCTT TGCTGCTCGC
GTCGGCATGC AGGCGCGGAC GCTAGAGATG CATATGGCGT TGGCCGAGTT AAGCGCCTGT
ACAAGTCAGC ATCTGATTAT GTGTGAGACT AACGCATTTG AGCCGGAATT ATTGAGCGTG
GTACTGGCTA ACGACAAGCT GGGTTTGTTG TTAATTGGTA ATGGTAGTGA GCCTGTGGCC
ATACAATCTT TAGTGGACAA GCACCCACAA ATCATTGCTA AACAGCATCC GATATTGCTG
CGCACCTTAG GCGAGTCTTT ATTATTGTTG CTCAACAGGG ATAGAGCTCC TTTTGGGCAA
CACCTTGAGC ATCAATCTAT TACAACCTTA AAAAATCAAT TAGCGGGCGT AGAATTGTTG
CTCGTTGAAG ATAATTATCT GAATCAAGAA TTAGCCGTTG AGTTATTGCG TCAAGCTGGG
GCGCGAGTCA CCGTCGCCCA GCACGGTCAA GAAGCGTTAA CACTGCTGGC TCAGCAATCC
TTCGATTGTG TGTTGATGGA TGGACAAATG CCCGTAATGG ATGGTTATGA AGCAACACGG
CTTATTCGAG CACAGCCACA GTTTGCCGAT TTACCCATCA TTGCAATGAC CGCCAATGCG
ATGGACTCTG ATAGGGAAAG GGCCTTGGCG GCTGGTATGA ATGCCCAGAT TAATAAACCT
TTCCAAGTGC AACAATTGTA TTCCACCATC GCACAGCATG TATCGGTGCA TAGTGTGCAA
TCTTTACCAG AGAGTCCTGA GGCCCATGAT CTTGATAAGG CACAGCTTAA ACAGGGTTTA
CCTTTGGTTG AAGAGCTGGA TATTGATGCA GGGTTGGCGC TGTGTAACTA CAACGCAGAT
TTGTATCGAC ATTTATTAAC ATTATTTGTG CAGACTGGCG CGAAGCTTCT GCAGAATCAG
CAAAATGAAT TTTCACAGGA TAATCTTTCA GCCTTGAGAT TAAGCTTACA TACTCTTAAA
GGGGTGGCAG GCAATATTGG CGCCGTTTCC CTCAAAGAGG ACTCAGGCCG ATTAGAGGCA
AGTCTTACCG ATATCAGCAG CCTGCAGCAG CTTGATGCAA ATATCCAGGA AACCGTTAGC
CAAGAGATCC ACTTACTGCA CGCCAAGCTC CAGCAGCTAT TAACCTTATT AGCTGAGTGG
CAGACGGTAA ATCAACCCGA TGAGGCGTCG CAGTCTATTT CTATGACAGA ATTGATGAGG
TTATTTGCCC AATTAACTCA AAACCTTAAA GAATATAATA CTGACGCATT GTCTTTAGTT
GAGCGGTTAA GCCAATTAAC GGTATTGCAA CCACAACGAC AACTCATTGC TGAATTAAAG
CAAGCCACAG GACAATTCGA TTTTTCCCAA GGGCTTGAGT TAGCGATTCA GCTCCAAGAG
TGGGCGCAGC AGCAGTTGGC GAAGGAATAA
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| Protein sequence | MAGYGLISLA ILMILSAFKL VNMRTRYLAQ LPLQSNVLWR LFPILFAFLF SSLSVLASPG
GQIPLTTAVI DRVSAPTPVL RVSMILSVDT PFNRQIGARA QAAAVDLNIQ LQVLYADGTH
DGLMTLGREV MNQGIDGLIF SPVDDFGEAL IREAQKLKIP VVTLRAKLDM LSSAALAELP
NFIANVNIND QKSGQLLMHY LLSVDQLNRD VPAVLLIAGP QGYPNVERGV EDVQRFMNSL
STRGTLKIAY TDWSVEQALA QFDSAIAAQP ALTTVVTMNA SAAVAVAAKA HQQLGANAPA
IGSMIWSESL VQDIKQGKIQ AAITGSEFSG AIALSILFDH LSARGGPSRK GSFVAPLVVI
TPNNYQDYES ILDFDPLRLN FRQISQHFNP DLSINELRLA DLLTSEARVN FLKTLTEPEL
NFLRQHPSIR VGIEPDGAPI DYVDQAGKHT GLIASYLSEI AKLIPVRFEV QPTQSWGQTL
KDFAADKLDM ISLISASEDR KQRILFTDAI GHFPAVIVMR KDAELVDGIE GLFGKTVAVT
RGDITEELLR KKYPEINIIA FDRLEDVLST TLASQVDAAV MLLPKAGQSL LSPANKELTI
VAPLDDEFEH SIGVRRDWPE LQSILNKALA QIPSSTRAEL DSRWFTVKYD FGMDPQQIKR
WAISSAMVIL GLFACFILWN YGLKRELLRR SRMAAQLESS MNKFHALFDS VMDACVIIDK
RGVIKECNAA LQTLLGVEDK TALVGTSLTQ FHLADTFMGS AVQIAQSVED VLKQGLLKFE
ADITDSQGQS IPAEVTLKSI ELNTERFVLA TYHNLAERRL VDRLIRHERN LLKNVLGMSP
IGVWVCVNGT CRYVNAQMTL MTGLEVEHAV ADIFLQPKDY WHYIRELAPE QECITFESKL
KGYHGQILDV LFTAYPTFYD GQHANLCWAL DITQEKAIQA ELASAKLQAD AANRAKSDFL
ANMSHEIRTP MNAIIGMSYL ALQTDLAEKR KDYIAKVHQA AGSLLNIIND ILDFSKIEAN
KLTVEHIEFD LDEVLTQLNN VIGFKVEENS MRLIYDIATD CPRYFIGDPQ RLGQILLNYC
NNAVKFSPKG SDILLSCQAE LDKQGATLTF CVADDGIGIP LDKQARLFHS FEQGDTSTSR
KYGGTGLGLA ICKRLSELMQ GEVWCESELG QGSRFYLRLH LPLVKPYDLS TQFAALQGES
LSIVGFMPDL SAIYSRFAAR VGMQARTLEM HMALAELSAC TSQHLIMCET NAFEPELLSV
VLANDKLGLL LIGNGSEPVA IQSLVDKHPQ IIAKQHPILL RTLGESLLLL LNRDRAPFGQ
HLEHQSITTL KNQLAGVELL LVEDNYLNQE LAVELLRQAG ARVTVAQHGQ EALTLLAQQS
FDCVLMDGQM PVMDGYEATR LIRAQPQFAD LPIIAMTANA MDSDRERALA AGMNAQINKP
FQVQQLYSTI AQHVSVHSVQ SLPESPEAHD LDKAQLKQGL PLVEELDIDA GLALCNYNAD
LYRHLLTLFV QTGAKLLQNQ QNEFSQDNLS ALRLSLHTLK GVAGNIGAVS LKEDSGRLEA
SLTDISSLQQ LDANIQETVS QEIHLLHAKL QQLLTLLAEW QTVNQPDEAS QSISMTELMR
LFAQLTQNLK EYNTDALSLV ERLSQLTVLQ PQRQLIAELK QATGQFDFSQ GLELAIQLQE
WAQQQLAKE
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