Gene SO_3922 details

Gene Information

• Locus tag: SO_3922
• ID: 1171561
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 4069385
• End bp: 4070068
• Gene Length: 684 bp
• Protein Length: 227 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637345682
• Product: formate dehydrogenase, putative
• Protein accession: NP_719453
• Protein GI: 24375410
• COG category: [C] Energy production and conversion
• COG ID: [COG2864] Cytochrome b subunit of formate dehydrogenase
• TIGRFAM ID: [TIGR01583] formate dehydrogenase, gamma subunit

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATCAAG AACATGATAT GAGACCCATT TTAAAACATC CGCTAAACGT CAGGATTTTC 
CACTACATTC TGCTGCTCAG CTTTTTGCCA TTAGCCGCAA CAGGTTTGCT ATTGTTTTTT 
AAACCGCTTT CCCAAGAAGG TATGCAGCTA ACCTATGATG TGCACATCAT TGCGGGGATT 
GTTATGGCCC TCGATGCCGT GGCATTTACC ATCATGGCAT TTGACCGAGT GGTACTGTTC 
ATCGCCCGCG TGTTTAGCTT CTCAGGGCGT GATGTGAAAT GGTTTATGGT GTTAGGCGGC 
TACCCACAGA AATTCTTACT GGGTAAAAAA GTACCTATTC CACCGATGAA CAAATACAAC 
TCAGGCCAAA AACTCTTTGG TGCCTGCGTA CTGATTGGCG GCACAGTGCT TATCCTCTCC 
GGTTTAGTGC TGTGGTTCAT TCCCCACGCT GCGCCGCGGG ATATAGTGTG GTTTTTAGGT 
CAGGCCCATT TAGTGTCAGG CTTAGTGTTA ACCGCCTTCT TGCCCGTGCA TTTATTCCTT 
GCTGTGTACC GCTTTGATGA TTTCAAGGCC ATGATGATCC ACGGTAATGT GCCTTACCAT 
GATGCCGCTG AGTACACCCC TCTGTGGGTT AAAAATGAAA TTGCCCCCGT CGCCACTAAC 
GGTGAACAAC TGACAAGCAA ATAG 

 

Protein sequence

MHQEHDMRPI LKHPLNVRIF HYILLLSFLP LAATGLLLFF KPLSQEGMQL TYDVHIIAGI 
VMALDAVAFT IMAFDRVVLF IARVFSFSGR DVKWFMVLGG YPQKFLLGKK VPIPPMNKYN 
SGQKLFGACV LIGGTVLILS GLVLWFIPHA APRDIVWFLG QAHLVSGLVL TAFLPVHLFL 
AVYRFDDFKA MMIHGNVPYH DAAEYTPLWV KNEIAPVATN GEQLTSK