Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3920 |
Symbol | hydA |
ID | 1171559 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 4067806 |
End bp | 4069038 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637345680 |
Product | periplasmic Fe hydrogenase, large subunit |
Protein accession | NP_719451 |
Protein GI | 24375408 |
COG category | [R] General function prediction only |
COG ID | [COG4624] Iron only hydrogenase large subunit, C-terminal domain |
TIGRFAM ID | [TIGR02512] hydrogenases, Fe-only |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAACGA CAACTTATCA ACCAGGAGAA ATCCAAGGGC TGATCAAGAT TAATGCATCC AAATGCAAAG GATGTGATGC CTGTAAACAA TTCTGCCCAA CCCATGCCAT TAATGGCGCT TCGGGTGCAG TACACTCTAT CGATGAAGAT AAATGCTTAA GCTGCGGACA GTGTTTAATT AACTGTCCAT TTAGCGCTAT TGAGGAAACC CACAGCGCAC TTGAAACCGT GATTAAAAAG CTCGCTGATA AAAATACCAC CGTGGTCGGG ATTATCGCGC CTGCGGTACG GGTGGCGATT GGTGAAGAAT TTGGCTTAGG TACAGGTGAG CTAGTAACAG GCAAACTCTA CGGTGCCATG AATCAAGCTG GCTTTAAAAT TTTCGACTGT AACTTCGCCG CCGATTTGAC CATTATGGAA GAAGGCAGTG AGTTTATTCA TCGCCTGCAC GCCAATGTAA AAGGTGAAGC TAACGCAGGC CCATTGCCGC AATTTACCTC CTGCTGCCCA GGCTGGGTAC GCTACCTCGA AACCCGCTAC CCTGCACTTT TACCTAACCT ATCGACCGCC AAATCACCTC AGCAAATGGC AGGGACTGTC GCCAAAACCT ACGGCGCCAA GGTATATCAA ATGCAGCCAG AGAATATTTT CACTGTCTCT GTAATGCCTT GCACCTCGAA AAAGCTCGAA GCCTCCCGTC CCGAATTTAA CTCGGCTTGG CAATATCATC AGGAACACGG CGCAAACTCG CCCTCCTACC AAGATATTGA TGCCGTGCTC ACCACAAGGG AAATGGCTCA GTTACTCAAA CTGCTCGATA TCGATCTCGC GAATACCGCG GAATATCAAG GCGATAGTTT GTTCTCTGAA TACACTGGCG CGGGCACAAT TTTTGGAACA ACCGGCGGGG TGATGGAAGC GGCGCTGCGT ACCGCCCATA AAGTACTGAC TGGAACTGAA ATGGCTAAGC TGGAATTTGA ACCCGTACGC GGGCTAAAAG GCGTGAAATC AGCCTCTGTC AGCCTGTTTG ATACAGAGCT TAACCAAGAT GTGACCGTCA ATGTCGCCGT AGTGCACGAC ATGGGCAACA ACATTGAGCC CGTACTGCGC GATGTGATGG CTGGCACCTC TCCTTATCAC TTTATTGAGG TGATGAACTG CGCTGGCGGT TGCGTCAACG GCGGAGGCCA ACCTATTGAA GGTAAAGGCT CTTCATGGCT GGGTAACATT TAA
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Protein sequence | MTTTTYQPGE IQGLIKINAS KCKGCDACKQ FCPTHAINGA SGAVHSIDED KCLSCGQCLI NCPFSAIEET HSALETVIKK LADKNTTVVG IIAPAVRVAI GEEFGLGTGE LVTGKLYGAM NQAGFKIFDC NFAADLTIME EGSEFIHRLH ANVKGEANAG PLPQFTSCCP GWVRYLETRY PALLPNLSTA KSPQQMAGTV AKTYGAKVYQ MQPENIFTVS VMPCTSKKLE ASRPEFNSAW QYHQEHGANS PSYQDIDAVL TTREMAQLLK LLDIDLANTA EYQGDSLFSE YTGAGTIFGT TGGVMEAALR TAHKVLTGTE MAKLEFEPVR GLKGVKSASV SLFDTELNQD VTVNVAVVHD MGNNIEPVLR DVMAGTSPYH FIEVMNCAGG CVNGGGQPIE GKGSSWLGNI
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