| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3914 |
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| Symbol | |
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| ID | 1171554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4058893 |
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| End bp | 4061085 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637345675 |
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| Product | TonB-dependent receptor, putative |
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| Protein accession | NP_719445 |
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| Protein GI | 24375402 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTTG CAAAACGCCG TAATGGTCGG GTCACGCTTG GTGCCCATGT TTTAGGTTCG
TTAACCATAG GTATGGCAGC CTCTGCTATC CCTGCTATGG CAGCTGAGCA GGCACAAGTC
GTTGATAAAA AAGTTGAACA TATTGAAGTC AATGGTGAGT ACTTAGGTTA TAACACCCGT
AAAGTACAAT CGGGTAAATT TACCGAAGAC CTACTCAATA CCGCGAAAAC CGTTACCGTA
ATCAACCAAG ATTTGATCAA AGATATGGGC GCGCAGAGTT TTACTGATGC GCTGCGAGCG
ACGCCTGGTA TTACCTTAGG CACTGGCGAA GGGGGGAACC CCTACGGTGA TAGACCTTTT
ATTCGTGGAT ACGATGCTCA ATCTTCCACT TTTATCAATG GCATGCGTAA TGTGGGTTCA
CAAAGCCGTG AAACCTTTAA CATTGAACAA ATTGAAGTCC TGAAAGGCCC AAGCTCAGTC
TACAACGGCC GTGGTGCGGT TGGCGGTAGC ATTAACATTG TGACCAAAAA AGCTCAGGCT
GAAGATTTTA TTAACGCTGA TGTTGCAGTG GGGACTGATG CCCTCAAACG TGCCAATGTT
GATATCAACC ATGTTATTAC CGATGAAGCT GCGGTTCGTG TCAACATGAT GGCTCACGAT
GCCGACACTC CAGGGCGCGA TGAGGTCACT GGTAATCGTT GGGGTGTAGC ACCGTCTGTT
ACCTTTGGGT TAACGACGCC GACTAAAGTG ACCCTTGAAT ATTATCATTT TGAAAACCAT
GATATTCCTG ATTATGGTAT TCCATACGAT CAGGCGACAG GCAAACCTGC CGATGTCGAT
CCCGACAATT TCTATGGCTT ATTATCGCGG GATTTTCGCG ACACGATGGA CGATACGGCA
TCAGTGTTGA TTAGCCACGA TTTTAACAAC GACATGCAGT TTACTTCGAC GTCCATCTAT
AGCCGCAACA GCAATTACTA TATTGTGACC AACCCTGACG ACACGGCGGG TAACGTCGCT
AAGGGGTATG TATGGCGTAA CACTAAGTCT CGCCATTCGG TCACAAAAAC CTTAGCAACG
CAATTACAGC TGTCAGGTGA AGCAACGCTG GCTGGATTCA CTAACCGTTT TGCGGTGGGA
ACTGAGTTAA GTAATGAGCA CACCAGTAAT TTGAGTTATA CCGTCGATAC AGGCAATGGC
CGTAATGGCG GTTGTAATGA GGCGATGCTT GCCAATTACA ACTGTACATT GCTCGATAAT
CCTAATCCCC ATGATCCTTG GATAGGGAAG ATCGCACTCG GCACTGATGC GACAGTGACA
GAAACAGACA CCCGCTCTAT TTATGGCTTC AATACCATTG AGCTAACTGA AGCTTGGATG
GTGAACGCAG GTATCCGTTG GGATGACTAC AGTACGAGTG CTAAGAACTC AACCTCTCAA
TTCGGTAATG ATGCTGATTT CTTCAACTAC CAATTGTCGG TACTGTATAA GCCAGCAGAA
AATGGCAGTA TCTACGCTGC GTGGGGAACA TCATCTAACC CACCTGGCAC GTCTAACGGA
GATGGGGCTG ATCGCCTAGG CAGTACCAAC GCCGATTTAG AACCAGAAGA TACCGAAAGC
TACGAGTTAG GCACTAAATG GGATCTTTGG GAGGGGCGTT TATCTCTGAA TGGCTCTGTA
TTCCAAATCG AGAAAAACAA TGCCCGCGTT GCAACCTCTG GCGATCGTAA TGCGCCACAG
GAAAACGTCG GTGAGCAAAA AGTGAAAGGC TTTGAAATCG GCTTCTCTGG TGACTTTACC
GAAGATTGGC ATGGTTTTGG TGGTTATACG TATTTGGATG CGACCCTTGA AAGCAATGGT
TACAACGCAG CGCTTAATGG TAATCGCTTC CCTAATACAG CTAAAAATAG CCTGAGCTTA
TTTACAACTT ACGATATTAC CGAGCAATTA ACGGTTGGCA CAGGTGCCTA TTATATGGAC
AAAGTGTATG GCAATACGGC CAACACCCTG TCGATTCCAT CCTACTGGCG TTTTGATTTG
ACCTCATCTT ATAAGATTAG CGAATTCATG ACTTTACGCC TGAACGTGCA GAATCTGACG
GATGAGCGTT ATTACGATAA AGCGTACACC GCGCATTTTG CCAATATGGC GCCTGGACGC
TTAGTAATGT TAAGTGCCGA TATGCACTTC TAA
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| Protein sequence | MKFAKRRNGR VTLGAHVLGS LTIGMAASAI PAMAAEQAQV VDKKVEHIEV NGEYLGYNTR
KVQSGKFTED LLNTAKTVTV INQDLIKDMG AQSFTDALRA TPGITLGTGE GGNPYGDRPF
IRGYDAQSST FINGMRNVGS QSRETFNIEQ IEVLKGPSSV YNGRGAVGGS INIVTKKAQA
EDFINADVAV GTDALKRANV DINHVITDEA AVRVNMMAHD ADTPGRDEVT GNRWGVAPSV
TFGLTTPTKV TLEYYHFENH DIPDYGIPYD QATGKPADVD PDNFYGLLSR DFRDTMDDTA
SVLISHDFNN DMQFTSTSIY SRNSNYYIVT NPDDTAGNVA KGYVWRNTKS RHSVTKTLAT
QLQLSGEATL AGFTNRFAVG TELSNEHTSN LSYTVDTGNG RNGGCNEAML ANYNCTLLDN
PNPHDPWIGK IALGTDATVT ETDTRSIYGF NTIELTEAWM VNAGIRWDDY STSAKNSTSQ
FGNDADFFNY QLSVLYKPAE NGSIYAAWGT SSNPPGTSNG DGADRLGSTN ADLEPEDTES
YELGTKWDLW EGRLSLNGSV FQIEKNNARV ATSGDRNAPQ ENVGEQKVKG FEIGFSGDFT
EDWHGFGGYT YLDATLESNG YNAALNGNRF PNTAKNSLSL FTTYDITEQL TVGTGAYYMD
KVYGNTANTL SIPSYWRFDL TSSYKISEFM TLRLNVQNLT DERYYDKAYT AHFANMAPGR
LVMLSADMHF
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