| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3763 |
|---|
| Symbol | |
|---|
| ID | 1171411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 3912378 |
|---|
| End bp | 3914102 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637345537 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | NP_719300 |
|---|
| Protein GI | 24375257 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGAGT CACAATTAAC CACTTCGGCG GCTAAACCTA GCCGCCTAGG CTGGTTCGAT
GATGTCCTAT TACTGGGCAT AATGGCCGTA CTCGCCGGGT GCGGTCTTAT CTACGAATAT
CTATTATCCC ACTATGCAGG CCGGATCTTA GGCGCACTTG AGGCTGCCAT CTATACCATG
ATCGGTCTGA TGATCGTCTC CATGGGGCTT GGTGCCTTTG CCGCGCGTAA AATTAAGGAT
GCGTTTACCG GCTTTGTGGT GCTCGAACTC ACCGTCGCGC TGTGTGGCTC ACTCGCGATT
TTGATCACCG CAGCAGTGAT AGGTTTTGGC CAACAATTGC CGATGCTCAT CGCCAGCACC
TTGGGCTTGC CACCGGATCA ACTGCCCGAA GGTGGGATGA TTGGCACGCT ACAAAAGCTT
AGCGAATATC TACCTTATTT TTGGGGCGTG CTATTGGGCT TGATGATCGG CATGGAAATT
CCACTGATCG CCAGGGTAAG ACAATCCCTT TCAGATGAAC ACTTACTCCA CAATGCGGGC
ACAATTTACG GCGCAGACTA TATAGGCGCA GGCATTGGCG CAGCTATTTG GGTCGGCTTT
ATGCTGGCTA TTGATATTCA ACTAGCAGCA GCGCTCACCG CCAGCTTTAA CTTGCTAGCA
GGGTTTGTGT TTATCTGGCG CTTTTGGCAG AAGATCCAAA GACCTAAATT ACTGTTAGCG
GCCCACTTAG TCGTCACTGG TGTATTGCTG CTACTCGCCA TTCAAGGGCC AAGCTGGGAG
CAACAGTTCA ACAATCTGCT TTATAAAGAT AAGGTGGTTT ATGCCAAGGC AACACGTTTT
CAACAGCTGA CCTTTACTGA GCGCCTACGC GGCAATGGCC TATCCCCCGT ATACGCCTTG
TATATCAATG GTCGTTTACA ATTTTCAAGT AGCGATGAAC ATATTTACCA TGCGTTTTTA
GTTCACCCAA CACTTGCGGC TAGCGCTCGT CATAACAAGG TATTAATCAT TGGCGGCGGT
GATGGACTGG GCCTAAAACA AGTATTACGC TGGGAGCCTG AGCAAGTGAC CCTACTCGAC
CTTGATGCGG CGCTGGTGCA ACTGTTTAAA TCCCCCGATC CTGATATGCC TGAGCGTTTA
AGCCAGGCCC TGCTATCACT TAATGGCAAT GCGTTTAACG ATCCTCGTGT AACGGTAATC
CATGATGATG CCTTTAATGG AGTCGATAAG CTGATTGCTA AAGGGGATAA ATATGATGCC
ATTATTGTGG ATTTACCCGA TCCCAGCCAT CCGGATCTGA ATAAGCTCTA CTCGGATTAT
TTCTATCGCA AACTGAAGGA ACTAATCAGT AATGATGGCG CTCTGACAGT ACAGTCAACG
TCACCCTATC ATGCGCAAAA AGCTTTTATT TCAGTAGCAA AAACCTTGGC ATTGGCGGGA
TTTGATGTAA AACAATATCA CCATAATGTC CCTAGTTTTG GCGAATGGGG TTGGAGTATC
GCCACCTTAG ATGGCAAGGA TGCTCAACAT CGTTTGGCAC AGCTGACAAA GCTGCCTATT
GCGGATGACT GGCTAACCTT AGGTTTAGTT AAAGGCGCGT TTGAATTTCC TGCCAATTTT
TATCAGGATG CGACCAATAT TAAGCCTAAT GAGCTGGGGT CATTACAGTT GTACCATTAT
CATCAACAGG CTTGGTCCGA AACCCAAGGA CTGGATCTTT TTTAA
|
|---|
| Protein sequence | MHESQLTTSA AKPSRLGWFD DVLLLGIMAV LAGCGLIYEY LLSHYAGRIL GALEAAIYTM
IGLMIVSMGL GAFAARKIKD AFTGFVVLEL TVALCGSLAI LITAAVIGFG QQLPMLIAST
LGLPPDQLPE GGMIGTLQKL SEYLPYFWGV LLGLMIGMEI PLIARVRQSL SDEHLLHNAG
TIYGADYIGA GIGAAIWVGF MLAIDIQLAA ALTASFNLLA GFVFIWRFWQ KIQRPKLLLA
AHLVVTGVLL LLAIQGPSWE QQFNNLLYKD KVVYAKATRF QQLTFTERLR GNGLSPVYAL
YINGRLQFSS SDEHIYHAFL VHPTLAASAR HNKVLIIGGG DGLGLKQVLR WEPEQVTLLD
LDAALVQLFK SPDPDMPERL SQALLSLNGN AFNDPRVTVI HDDAFNGVDK LIAKGDKYDA
IIVDLPDPSH PDLNKLYSDY FYRKLKELIS NDGALTVQST SPYHAQKAFI SVAKTLALAG
FDVKQYHHNV PSFGEWGWSI ATLDGKDAQH RLAQLTKLPI ADDWLTLGLV KGAFEFPANF
YQDATNIKPN ELGSLQLYHY HQQAWSETQG LDLF
|
|---|
| |