Gene SO_3655 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3655 
Symbol 
ID1171314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp3809797 
End bp3810357 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content45% 
IMG OID637345444 
Productpilin, putative 
Protein accessionNP_719197 
Protein GI24375154 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4970] Tfp pilus assembly protein FimT 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCCGCG ACCGCTTACA AGGCTCAAGT CCACAATCCG CAGGCTTTAC CTTAATTGAA 
CTCGTTGTTG TGATTATTGT GCTTGGAGTT TTAGCCGTTG TGGCCTTGCC CAAGTTTATC 
AATGTACAGC AAGATGCGCA GATAGCGACA GTCAAAGCCG CTGGCGCGGG TTTTAAATCG 
GGGTTAAATT TAGCACGTTC AGTTTGGGCG GTTAAAGTCG GCTCAGGCCC CAAGGAAGAT 
TTGCCCGTAT TTGGCACAGC ACAGTCAGAA CAAGTGGACT TTAATGCTAA TGGCTGGCCG 
GTTCAGCACT ACATTTATGG CAATGAGGCG TCACCTTCAC TCGATAATGT GGAAGATTGT 
GTCTCAGTAT GGGAAGTGTT ATTCCAAAAT TCGCAGCCTA GCGTCTCACG ACTCAATATT 
GATGCCACCG AAACAGACTA CAAAGCCAGT TATATCAGCC CTAATCAATG CCGATATTTT 
TATCGTGCCA ATGATAAATT ATCCATTTAT TACGATTCAC GAACGGGAAC GGTCACAACA 
GACTTAGATC CCAATAGTTA A
 
Protein sequence
MIRDRLQGSS PQSAGFTLIE LVVVIIVLGV LAVVALPKFI NVQQDAQIAT VKAAGAGFKS 
GLNLARSVWA VKVGSGPKED LPVFGTAQSE QVDFNANGWP VQHYIYGNEA SPSLDNVEDC 
VSVWEVLFQN SQPSVSRLNI DATETDYKAS YISPNQCRYF YRANDKLSIY YDSRTGTVTT 
DLDPNS