| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3556 |
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| Symbol | |
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| ID | 1171227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 3714177 |
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| End bp | 3715439 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637345355 |
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| Product | cyclic nucleotide phosphodiesterase, putative |
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| Protein accession | NP_719103 |
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| Protein GI | 24375060 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAATTAA GGGATAATTT TAAACGTAAG ACTATAGATC GCTTGGATTA TCGCTATCAT
CTCTTGCTGT TGATTATACC GATAGTCCTC TTTGTTTTAT TGTTTGTTTT TAATGCCCCG
ACAGAAGGCT GGACCATTCT CCCCCTGCTG TTTGTCTGCC TTATCTATGT CGTTACCTAT
AGCTTAATTT ACTATCTGCA TCAGGGGCGT TTAACTCGCC TATGGCAACA CTTAGAGCAG
GTTGTCAGTA TTAATGATGC CATTTATGAA CTTGCCCACC TATCAAGCCA ATATAAAAAT
GAGCATGCAT TTCTCGATGC CCTACTCAAT AAAGCCGTCT GTATTATTAA TGGCGCGGAA
ATGGGCAGCA TCATCAAGGT CAGTGAGGAT AACCACAAGC TACATTTTGA ATCCGTCGTG
GGACTCGATC TTAACAAGCT AAAAAGACTG AACTTTTCCC TTGAACAATC CTTCGAGTAT
CGACTCACCA AGGGTAAATG TGACCGTGTA GTGGTCGTGG ATGATATGAA AAATATCAAT
GCCGCAAGCA CACTAACAAA TGAACAACAG CAGGTACTGC TTACAGCAGC CAAGCAACCA
ATACGCTCCA CACTCTCCAG CCCAATACGA ATTGATGGCA AACTTTACGG CATGCTTAAC
CTCGACAGCA GCAGCGTTGG CGCCTTTAAC GACTACGACC GTAATTTGGT CTCCATCCTC
ACCCATGAGG CCAGCAACGC CATTGCCTTG TATCAAAAGT CGCTGCAAAT CACCAAGCTC
GCCAATTTCG ATAACCTAAC AGGGCTCTAT AACCGCAAAA ACTTTGAAGA TGCCTTACAG
CATTGGCAGC CGAAGGCTCA TTTAGGCAGC TTTTTAGTGA TTATTGATAT GGATAATCTC
AAAATTATCA ATGATCAACA GGGGCATCAG GTCGGCGATG TGGCAATAAA AGAAGTCGCT
AAAACAATCC TAGGTTTCTG GAAACACAAA GGCATTATCT CTCGGTTTGG TGGTGATGAG
TTTGTAGCCC TATGCCATGG CCCGCTTGAA CTAATCGAAA ACGATCTGGA TGCCATGCGC
CTTAAGTTAC ATCATGAATC GCCCCTAAAT CTCAATTTTA GTGTGGGCAT CGCCCCCTAC
GATAATGATT GGGCTAAGTC TTTTAAACAG GCTGATAATG CGATGTATGA GCAAAAGCGC
GGTAAAAAAC AGGCCGTTAA TGCACTCAAA GCCATTGTGG CCAATAATCA GCTGCCGCAA
TAA
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| Protein sequence | MKLRDNFKRK TIDRLDYRYH LLLLIIPIVL FVLLFVFNAP TEGWTILPLL FVCLIYVVTY
SLIYYLHQGR LTRLWQHLEQ VVSINDAIYE LAHLSSQYKN EHAFLDALLN KAVCIINGAE
MGSIIKVSED NHKLHFESVV GLDLNKLKRL NFSLEQSFEY RLTKGKCDRV VVVDDMKNIN
AASTLTNEQQ QVLLTAAKQP IRSTLSSPIR IDGKLYGMLN LDSSSVGAFN DYDRNLVSIL
THEASNAIAL YQKSLQITKL ANFDNLTGLY NRKNFEDALQ HWQPKAHLGS FLVIIDMDNL
KIINDQQGHQ VGDVAIKEVA KTILGFWKHK GIISRFGGDE FVALCHGPLE LIENDLDAMR
LKLHHESPLN LNFSVGIAPY DNDWAKSFKQ ADNAMYEQKR GKKQAVNALK AIVANNQLPQ
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