Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3412 |
Symbol | |
ID | 1171087 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3551415 |
End bp | 3552305 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637345213 |
Product | extracellular solute-binding protein |
Protein accession | NP_718965 |
Protein GI | 24374922 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATAGTGC CAAAGTGCAT TGTTCAGTTT AGCCATATCC TGCTGTTATA TCTCTTTATC TTTCCCGCTT GGGGCGCGCC ATCCGAGGCG AATTTTCCTG TTTGTTTAAA TCCGCTTAAC GTCGGTTATA ACGATTGGCC TCCCTATGCA TGGCAGGATG TTCAGGGCGA GGCTCAAGGA CTGGATGTTG AATTGCTGCG TACTTTTGCT GAGTTTTTGG GGTGTGAGAT TAAGTTTATC AATGTCCCAG CTAAGCGCTC ACATCAAATG CTGAAAAGTG GCGCGTTAGA TATGATGATG GGGGCAACAA AAATTATAGA GCGTGAGGAA TATGCTTTTT TCTCAGAGCC ATACCGTGAT GAAGAGGTGC GCTTATTCGT ATTGGACGAG AAAAAAGATA AGCTTAAGTT AGACCAATGG CAGGATATTT TCACTCAAAA ATTACGGCTA TTGGTACCGG TGAGTGGCTG GTATGGCGTG GACTATGAGG AGTCTCGGGA GCGTTTAGCC AAGGAAAATT TATTGGTACT GAGTCCCGAT GCGGATAAAT CGGTGCAAAT GCTCACCTAT GACAGAGCGG ATCTGATTAT AGGAGATGCT ATGGCGATGC CTTATATTGC GAGCCAACAT CAGGGCGTGA GGTTATTGGT ACTTAACCCC ATTTTGGATC ATAACTCAAT ACACTTAATG CTCAGTAAAC AGAGTATGTC TGCCCAACAA TTAGCACAAT TTAATCGTGC AATTAAGGCG TTAACAACTA ATGGCGAAAT TGCTCGGATT GTGCACAAAT GGCAGCAAAT TTCGCTGGCA CAGCAAACAA AAATGAGTAA TCAGCATGGT CCATTTAATC GCCTGTATGC AGGGCTATTA ACGCTTGATT TAGCAAGATA A
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Protein sequence | MIVPKCIVQF SHILLLYLFI FPAWGAPSEA NFPVCLNPLN VGYNDWPPYA WQDVQGEAQG LDVELLRTFA EFLGCEIKFI NVPAKRSHQM LKSGALDMMM GATKIIEREE YAFFSEPYRD EEVRLFVLDE KKDKLKLDQW QDIFTQKLRL LVPVSGWYGV DYEESRERLA KENLLVLSPD ADKSVQMLTY DRADLIIGDA MAMPYIASQH QGVRLLVLNP ILDHNSIHLM LSKQSMSAQQ LAQFNRAIKA LTTNGEIARI VHKWQQISLA QQTKMSNQHG PFNRLYAGLL TLDLAR
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