| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3228 |
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| Symbol | fliF |
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| ID | 1170920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 3366570 |
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| End bp | 3368231 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637345043 |
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| Product | flagellar MS-ring protein |
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| Protein accession | NP_718783 |
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| Protein GI | 24374740 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCAAG GGGTCCAGCA AGAACATAAA TCCGGCGTAC TGGGGAACCT CGGTGGCGTC
GATATGATGC GCCAAATCAC CATGATTTTA GCGTTAGCCA TTTGTTTGGC GCTAGCCGTA
TTTGTCATGA TTTGGGCACA GGAACCTGAG TATCGCCCAT TGGGTAAAAT GGAAACTCAG
GAGATGGTGC AAGTGCTAGA TGTACTTGAT AAAAATAAAA TCAAGTATCA AATCGATGTT
GATGTCGTTA AGGTGCCGGA AGATAAGTAT CAAGAAGTTA AAATGATGCT TAGCCGTGCG
GGTATTGATA GCGCGGCAAC GTCCAAACAA GACTTTCTCA CCCAAGACAG TGGCTTTGGT
GTGAGTCAAA GAATGGAGCA AGCCCGCCTT AAGCACAGTC AAGAGGAAAA CCTTGCCCGC
GCGATTGAAC AATTACAAAG TGTGAGCCGT GCAAAAGTGA TTTTAGCGCT CCCCAAAGAA
AACGTGTTTG CCCGTAACAC CGCTCAGCCA AGTGCTACCG TTGTGATCAA CACCCGCCGT
GGCGGTTTAG GCCAAGGTGA AGTGGATGCT ATCGTGGATA TCGTCGCTTC AGCGGTACAA
GGGTTAGAGC CTTCTCGCGT CACGGTAACG GATTCTAATG GCCGTTTACT GAACTCTGGT
AGTCAAGATG GGGTTTCAGC AAGGGCGCGC CGTGAGCTTG AGTTGGTACA GCAAAAAGAA
ACCGAATACC GGACTAAAAT TGACTCGATT CTCTCGCCAA TTCTTGGACA TGATAATTTC
ACTTCCCAAG TGGATGTAAG CATGGATTTC ACCGCAGTTG AACAAACTGC CAAACGTTTT
AACCCCGACT TACCATCGCT ACGCAGTGAA ATGACGGTGG AGAATAACTC AACGGGTGGT
TCGACTGGGG GGATTCCTGG TGCTTTATCG AACCAACCCC CTATGGAATC AAATATTCCG
CAGGAGGCTG CGACAGCAGC AACCGAAAGT GTGGCCGCAG GTAACTCTCA CCGTGAAGCG
ACACGTAACT TTGAATTAGA TACCACTATT AGCCATACCC GTCAGCAAAT TGGCGTTGTG
CGCCGTGTGA GTGTATCGGT TGCGGTGGAC TTTAAACCGG GCGCCGCAGG TGAAAATGGT
CAGGTGGCAC GCGTTGCCCG TACCGAGCAA GAGTTGACTA ACATTCGCCG TTTATTGGAG
GGAGCAGTGG GCTTCAGTGC GCAGCGTGGT GATGTGCTTG AAGTCGTGAC AGTGCCCTTT
ATGGATCAAT TAGTTGAAGA TGTACCCGCC CCTGAATTAT GGGAGCAGCC TTGGTTTTGG
CGTGCGGTCA AATTAGGCGT CGGTGCATTA GTGATCCTAG TACTTATCCT TGCAGTGGTT
CGCCCTATGC TTAAACGCTT AATCTATCCA GATCGCGTCA ATATGCCAGA GGATGGAAGA
CTGGGGAATG AGCTTGCCGA GATCGAAGAT CAGTATGCTG CCGATACCTT AGGGATGCTC
AATACCAAAG AAGCAGAGTA TAGTTATGCT GACGATGGCT CAATTCTTAT CCCTAATCTG
CATAAAGATG ATGATATGAT TAAAGCTATC CGTGCGCTTG TGGCGAATGA GCCCGAGCTT
TCTACCCAAG TCGTGAAAAA CTGGTTACAA GACAATGGCT GA
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| Protein sequence | MDQGVQQEHK SGVLGNLGGV DMMRQITMIL ALAICLALAV FVMIWAQEPE YRPLGKMETQ
EMVQVLDVLD KNKIKYQIDV DVVKVPEDKY QEVKMMLSRA GIDSAATSKQ DFLTQDSGFG
VSQRMEQARL KHSQEENLAR AIEQLQSVSR AKVILALPKE NVFARNTAQP SATVVINTRR
GGLGQGEVDA IVDIVASAVQ GLEPSRVTVT DSNGRLLNSG SQDGVSARAR RELELVQQKE
TEYRTKIDSI LSPILGHDNF TSQVDVSMDF TAVEQTAKRF NPDLPSLRSE MTVENNSTGG
STGGIPGALS NQPPMESNIP QEAATAATES VAAGNSHREA TRNFELDTTI SHTRQQIGVV
RRVSVSVAVD FKPGAAGENG QVARVARTEQ ELTNIRRLLE GAVGFSAQRG DVLEVVTVPF
MDQLVEDVPA PELWEQPWFW RAVKLGVGAL VILVLILAVV RPMLKRLIYP DRVNMPEDGR
LGNELAEIED QYAADTLGML NTKEAEYSYA DDGSILIPNL HKDDDMIKAI RALVANEPEL
STQVVKNWLQ DNG
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