Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3216 |
Symbol | fliR |
ID | 1170908 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3356767 |
End bp | 3357564 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637345031 |
Product | flagellar biosynthesis protein FliR |
Protein accession | NP_718771 |
Protein GI | 24374728 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGCTGT TGCTCGATAC ATTAATGCAA ACCATAGCCT CCTATATGTG GCCATTGTTT CGAGTTGCCA GCATGCTGAT GGTTATGGTG GTTTTTGGCG CGGCAACAAC TCCCACTCGG GTGCGTTTAC TCCTTGCTAT TGCCATTACT TTAGCCATTG CGCCCGTGTT ACCCCCCGTT AAAGATGCAC AATTATTTTC CTTAAGCGCC GTTTTTATTA CCGCTCAGCA AATTATTATT GGCGTGGCCA TGGGCTTCGT GACCCAAATG GTGATGCAAA CCTTTGTGTT AACAGGGCAA ATTATTGGTA TGCAGACCAG CTTAGGTTTT GCATCCATGG TCGATCCGAG TTCAGGCCAA CAAACGCCGG TGATTGGTAA CTTTTTTCTG CTGCTCGCAA CCTTAATTTT TCTGGCCGTT GATGGGCATC TATTGATGAT CCGTATGTTA GTGGCCAGTT TTGATACGCT GCCGATTTCT AATGTTGGAT TAACCCTGAC CAGTTATCGC TCGTTGGCTG AATGGGGGTC CTATATGTTT GGCGCGGCTT TAACTATGTC GCTTTCGGCG ATTATTGCGT TATTGCTCGT GAACTTATCT TTTGGGGTGA TGACACGTGC TGCGCCGCAG CTCAACATTT TTTCGATTGG TTTTCCTATC ACTATGATTG GTGGGCTGTT AATTTTGTGG TTAACCTTAA CTCCCGTTAT GGCTCATTTC GATGAGGTAT GGGCATCGGC ACAGCTTTTG CTGTGTGATA TTTTAGGGCT TCAATGTCAA GCCGATGGCA TTCTTTAA
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Protein sequence | MELLLDTLMQ TIASYMWPLF RVASMLMVMV VFGAATTPTR VRLLLAIAIT LAIAPVLPPV KDAQLFSLSA VFITAQQIII GVAMGFVTQM VMQTFVLTGQ IIGMQTSLGF ASMVDPSSGQ QTPVIGNFFL LLATLIFLAV DGHLLMIRML VASFDTLPIS NVGLTLTSYR SLAEWGSYMF GAALTMSLSA IIALLLVNLS FGVMTRAAPQ LNIFSIGFPI TMIGGLLILW LTLTPVMAHF DEVWASAQLL LCDILGLQCQ ADGIL
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