Gene SO_3189 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3189 
Symbol 
ID1170882 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp3327042 
End bp3328064 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content38% 
IMG OID637345005 
Productpolysaccharide biosynthesis protein 
Protein accessionNP_718745 
Protein GI24374702 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0451] Nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACGTT ACGAACAAAT TAAACAAGAA CTGCTAAATT CTCCCAAAAC TTGGCTAATA 
ACAGGTGTTG CAGGTTTTAT CGGTTCAAAT TTATTAGAAC AATTGCTTAA ATTAAATCAA 
ACTGTTATTG GATTGGATAA TTTTGCAACT GGCCGTCAAC ATAATCTCGA CGAAGTGCAA 
TCACTTGTCA CATCAGAACA ATGGATGCGT TTTAGCTTCA TAAATGGAGA TATTCGCGAT 
TATGCTATTT GTGAAGCTGT AGTAAATGGC GTTGATTATG TGCTTCATCA AGCTGCTCTG 
GGATCTGTAC CACGCTCAAT CGCTGATCCA ATTACCACTA ATGCTGCAAA TATCACTGGC 
TTTCTTAACA TGCTTCAAGC TGCAAAAGAG GCTGAAGTAA AAAGCTTTAC TTATGCTGCT 
TCCAGTTCAA CTTATGGTGA TCATCCTGCT TTGCCCAAAG TTGAACAGAA TATTGGTAAT 
CCGCTTTCTC CTTATGCTGT AACGAAATAT GTGAATGAGC TCTATGCTAG TGTATATGCT 
CGTACTTATG GATTTGAAAC GATAGGGTTA AGATATTTTA ATGTGTTTGG TCGGCGTCAA 
GATCCTAATG GTGCCTATGC AGCCGTAATT CCTAAGTGGA CATCTTCTAT GATAAAAGGG 
GAAGACGTTT TTATTAATGG GGATGGCGAA ACGAGTCGAG ATTTTTGTTA TATCGATAAC 
GTAGTACAAA TGAACATATT AGCTGCAACA GCAGCGTCAG AAGCTAAAAA TGAAGTTTAT 
AATGTCGCAG TTGGTGATAG AACAACCTTG AATGATCTTT ACTTTGCTAT AAAGGATTCA 
TTAAATGCGA ATGGCATTAA TGTTAATCAA AACCCAAACT ATCGTGATTT TAGAGCTGGG 
GATGTGAGAC ATTCACAAGC TGATGTAAGT AAAGCCGTTA CTAGACTAGG TTATCAATAT 
ACACATAAGA TACTTGAAGG TATCTCAGAA GCGATGCCTT GGTACAAGGA GTTTTTGGCA 
TAA
 
Protein sequence
MTRYEQIKQE LLNSPKTWLI TGVAGFIGSN LLEQLLKLNQ TVIGLDNFAT GRQHNLDEVQ 
SLVTSEQWMR FSFINGDIRD YAICEAVVNG VDYVLHQAAL GSVPRSIADP ITTNAANITG 
FLNMLQAAKE AEVKSFTYAA SSSTYGDHPA LPKVEQNIGN PLSPYAVTKY VNELYASVYA 
RTYGFETIGL RYFNVFGRRQ DPNGAYAAVI PKWTSSMIKG EDVFINGDGE TSRDFCYIDN 
VVQMNILAAT AASEAKNEVY NVAVGDRTTL NDLYFAIKDS LNANGINVNQ NPNYRDFRAG 
DVRHSQADVS KAVTRLGYQY THKILEGISE AMPWYKEFLA