| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3142 |
|---|
| Symbol | dcp-1 |
|---|
| ID | 1170834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 3276288 |
|---|
| End bp | 3278438 |
|---|
| Gene Length | 2151 bp |
|---|
| Protein Length | 716 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637344958 |
|---|
| Product | peptidyl-dipeptidase Dcp |
|---|
| Protein accession | NP_718699 |
|---|
| Protein GI | 24374656 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0339] Zn-dependent oligopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCGACC GCTACCATAT TTCCCGTGCT AAGTTAGCTT ATTTATTAGA TTCTACCGCT
GCGCCGGTTT GTGTTCTTTC GCCAGTATCA AGTTGGGGCG CTCATATTAT TGCGCTGATT
GGCGGCATAT TAACGGCCCA CGGCGTTGCG GATTCAGGGC ATTTAACTGT CTTTATTCAA
ATGATCCCTA TGAATTTTTA CGCTATTTTC TCTTTATTAT TACTGCTTTG TGTCTCCTTT
ATGGGGTTAG ATATTGGCCC GATACGCGAA CATGAATTAA ATGCTATGCG CGGTAATTTA
TACGATGAAA CTAAAGGTTT ACCGCCAGGC GCAAATGCCG ATTTACCCGA AGCTGATACA
GGTAAAATCC TCGGATTATT TTTACCTATA ACAGATTTGC CACTCTGTAT TTTATGA
|
|---|
| Protein sequence | MRKSFIAIAI GATLMTGAMT GCSSQDTKAT NVTAVQTQNP LFQASTLQYQ APDFNAIKDE
HFQPALEQGI KEQYQEILTI ANNPAAPTFD NTIVAMEKSG ALLNRASSVF YNLAGSNSNP
TLRKIQGEMA PKMAAHSDNI NLNPALFARI ETIYNNRNNL GLTPEAVRLV EMYHQRFIMA
GAKLTDEQKV KIRALNEEQS TLTNEFSQRL LRLTKDIAIV VDNKEQLAGL SDSEITSAAN
DAKAAGHDGK YLINITNTTR QPVLASLENR ELRQRIWEAS ANRGLKGENE TASLVSRLAQ
LRAERAALLG YENWASYRLA PQMAKTPEAV YSMFGSMVPA VVANTEKEAA DIQAMINKTG
GKFELAPWDW EFYAEKVRQE KYALDANSIR PYFEFNRVLE DGVFYTLKEL YGVTLKPRPD
LPVYHPDVKA YEMFDADGSS MAIFYADYFA REGKRGGAWM SSFVGQSFLE GTKPVVVNVM
NIKKAPEGQP TFVSYNEVTT MFHEMGHGTH GMFSKVTYPS LSGTSVSRDF VEFPSTFEED
WAAHPKVLAN YAKHYETGKP IPDELLQKLL KSGSFNQGFD TLEYMAAALV DMEWHSLSPD
APLQDVATFE ANALKKHGLN ITAVPPRYKS TYFAHAFPGG YSASYYAYMW SEILAADAFA
YVQTQGGLNR DIGMKYRKTI REVGNSIAPM EAYKNFRGQE PTTEGLLNRR GLNQTK
|
|---|
| |