| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_2370 |
|---|
| Symbol | |
|---|
| ID | 1170091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 2476011 |
|---|
| End bp | 2476877 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637344208 |
|---|
| Product | phage integrase family site specific recombinase |
|---|
| Protein accession | NP_717960 |
|---|
| Protein GI | 24373917 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGTGATA ACGCGTTAAA AACCAAGGTC GCTATTTTAT CTTCTTTTTA TACTTACTTA
ATAAGTGAAG AATTTTGCGA ACGTAATCCT GCGCAAATTT GGTTGAATCA CAGTCGTTTT
GCTCTAAATA AACAATATCA AAATCAAACT GATGAAGATG AAAATAGCTT GGCCTTCACG
GAGTTACAGT GGTCCTATGT GATGACTACT GTTACTCAAC TTGCTGAAAT ATTACCAGAA
TTACATCAAC GCAGCTTATT TTTGATTTCA TTAACTTATT CTTGCTATTT ACGTATTTCG
GATGTTTCCG CGCGCGTTGG TTATTCACCC GTTATGGGTC AATTTAGGCA AAATACGCAG
ACAGGCATTT GGAGTTTTCA CATTCCACTC AGTAAAGGTG GCAAAAAACG TAGTGTTGCA
ATTTCAAAAG CGTTACTAGC TGGTTTAGTA AAATATCGAC AATTTTTAGG TCTTCCAGAT
TATCCAAGCC AGGGAGAACT TCATCCCTTA TTTGTTCGGC ACAGAGCCGC TGGTCGTGGA
CGAGATGTCG GCTTAGTGAA TGCCAACCTT GGGATCCGTC AGATACGAGA AGAAATCCAA
GCCATTATTA ATTTGGCTGC GGATAAAGCT CAAACCGATG GATTTATCCA AGATGCAGCA
CAAATGCGCA AGCTCACTGC ACACAATATT AGGCATACAG GGATCACCCA TGACATCAAT
ATCAATCGTA GACCGTTGTC ACATGTCCAA GCCGATGCAG GCCATGAGAG TATTGACACC
ACATCAAAAT ATTTGCACAC CACACAAATC GAAAGACACG AAAGCGCTTA TAATAAGCCA
TTAGATCATT TACAAGGTAT TGATTAG
|
|---|
| Protein sequence | MSDNALKTKV AILSSFYTYL ISEEFCERNP AQIWLNHSRF ALNKQYQNQT DEDENSLAFT
ELQWSYVMTT VTQLAEILPE LHQRSLFLIS LTYSCYLRIS DVSARVGYSP VMGQFRQNTQ
TGIWSFHIPL SKGGKKRSVA ISKALLAGLV KYRQFLGLPD YPSQGELHPL FVRHRAAGRG
RDVGLVNANL GIRQIREEIQ AIINLAADKA QTDGFIQDAA QMRKLTAHNI RHTGITHDIN
INRRPLSHVQ ADAGHESIDT TSKYLHTTQI ERHESAYNKP LDHLQGID
|
|---|
| |