Gene SO_2049 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_2049 
Symbol 
ID1169798 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp2149297 
End bp2150256 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content43% 
IMG OID637343920 
ProductGGDEF family protein 
Protein accessionNP_717652 
Protein GI24373609 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCGCAC TTGATATTCC GGTAACGCCA GAAAACTACA CGGTCTGGTA TGAGTATTTT 
GCCCAGTCGA ATTTGGATTT AAATCGTGCT ATTGATGGTT TTCTTGCAAA CAACGTGGTA 
TTTACCAAAG AAGTGAATAC CAGTCTGTAT AAGAATTTTA TCCAAGAGAA GTCCCCTGAA 
GTTATCGAAA ATGTCCAGAT TGAAACCCAG ATATTGATTA ACTCTCTTAT CAGTAAAATT 
ACCCAGCTAA ACCAAGGAAC AGAGGCATTT TCCAACACAT TAGCGGACTT TGGCCTACAG 
CTCCAATCTT CACCCGATGT GAACACCTTA AATCAATTGG TCGATGGGGT GATTGATGAA 
ATGCAGAATC TATTGGTCAA TAACCAAACC ATGGAGCAGA GTCTCAATGC CATGGGGCAA 
GAAGTACAAA ATTTAAAAAC GGAAATGGAG AATTTAAGTC TGGCGGCAAT GACAGACCAA 
TTGACCTCAC TACATAACCG CCGTGCCTAC GAAATTGCCA TTCAAGACCA TATTCACCGC 
GCGGAGGAGC AACATACCCG TTGTAGTTTA TTACTTATCG ACATCGACAG ATTTAAGGTG 
TTTAACGATA CCTATGGTCA TCAGGTTGGT GATAAAGTCT TGGCTTATGT TGCGCTTGCT 
TTAAAACAAT GTGTGCGTGG CGATGACTTT GTGGCCCGTT ATGGGGGAGA AGAATTTGTG 
GTGTTATTGC CCAATACCCA TTTCCATGAT GCATTGCAAG TGGCTGAGAC CTTACGAGGG 
AGGATCTCCG AGCGCCGCTT GGCTATAGGC AAAGATAAAA AACTTTCATT GGGCGCCATT 
ACGGTGTCAA TTGGCTTAGC CTCTTTGCAA AAAGGCGATG ATGCAGAAAC TCTATTTAGC 
CGTGCTGATA AAGCCTTGTA TGAAGCCAAA TCCGATGGCC GTAACTGTGT GCGGGGCTAA
 
Protein sequence
MSALDIPVTP ENYTVWYEYF AQSNLDLNRA IDGFLANNVV FTKEVNTSLY KNFIQEKSPE 
VIENVQIETQ ILINSLISKI TQLNQGTEAF SNTLADFGLQ LQSSPDVNTL NQLVDGVIDE 
MQNLLVNNQT MEQSLNAMGQ EVQNLKTEME NLSLAAMTDQ LTSLHNRRAY EIAIQDHIHR 
AEEQHTRCSL LLIDIDRFKV FNDTYGHQVG DKVLAYVALA LKQCVRGDDF VARYGGEEFV 
VLLPNTHFHD ALQVAETLRG RISERRLAIG KDKKLSLGAI TVSIGLASLQ KGDDAETLFS 
RADKALYEAK SDGRNCVRG