Gene SO_1985 details

Gene Information

• Locus tag: SO_1985
• ID: 1169741
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 2088414
• End bp: 2089106
• Gene Length: 693 bp
• Protein Length: 230 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 637343864
• Product: transcriptional activator, putative
• Protein accession: NP_717592
• Protein GI: 24373549
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3806] Anti-sigma factor
• TIGRFAM ID: [TIGR02451] anti-sigma factor, putative, ChrR family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTAAAC ATCACCCCCA TGCAGAATTA CTTCAGGCCC ATGCACAAGG TGAACTCCCC 
TTGTCGATGT CTATGGCCGT CGCTGCCCAT TGTGCCTTAT GTCAAGAATG CCAAAATCAG 
ATTGCTAAAT TAACTGAACA AGCGGCCAAA CTTGCTTTTG TTTCCTCCAG TGATGATCCG 
GTTCAACACA ACGCTTCAAA CGAGATTGAT GTCGTCGATA ATGACCCATG GCAACAAATG 
TTATCGAACA TTATGGCGCT TCCCGAAAGC ACAATGAGTG AACCCTACAT AGAATCTTCA 
GTGACGGTTA GCCATAGAAA TATCCGCTAC CAAATCCCTA GGGTTTTTCG TCAGCATATT 
GCACTACCAT GGCAACAAAT TGGCAAAGTC AGTCGGATGC GATTCGATAT TGACGAAAAA 
AATACCCGCG CCAGTTTATT ATATATCGAA GCCTTAGGTG AAATTCCACA GCATACCCAT 
AAAGGGTTTG AGTTAACCTT ACTATTGTCA GGCGAATTTT CGGATTCGAC AGGTAATTAT 
GTAGTCGGTG ACTTTATTAT TTTAGATGGT AATACTCAGC ATTCACCCAC AACTCAAACG 
GGATGTTTAT GTTATACCGT ATTGGATGCA CCACTCTATT TTACTAAGGG AATTAGTAAA 
CTGTTAAACC CTATCGGAGA GCTCATTTAT TAA 

 

Protein sequence

MIKHHPHAEL LQAHAQGELP LSMSMAVAAH CALCQECQNQ IAKLTEQAAK LAFVSSSDDP 
VQHNASNEID VVDNDPWQQM LSNIMALPES TMSEPYIESS VTVSHRNIRY QIPRVFRQHI 
ALPWQQIGKV SRMRFDIDEK NTRASLLYIE ALGEIPQHTH KGFELTLLLS GEFSDSTGNY 
VVGDFIILDG NTQHSPTTQT GCLCYTVLDA PLYFTKGISK LLNPIGELIY