| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1973 |
|---|
| Symbol | |
|---|
| ID | 1169732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 2077699 |
|---|
| End bp | 2078406 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637343855 |
|---|
| Product | ABC transporter |
|---|
| Protein accession | NP_717580 |
|---|
| Protein GI | 24373537 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCGAT GGTTTTTTCT GCTGTTTTAC GTTGGATTTA GCACCTTACA GAGTGCGCAG
GCCGATACCG TAAAGTTAAC ATCTTTGCTT TGGCCGCCGT ATGCTGGCTA TCAACTTGTA
CAAGAAGGGG CAAGTGTTGC AGTAGCCCGT GCGGCGTTTG CGCGAATGGA TCAACAACTC
ATTGTTGATT TTTATCCTTG GAGTCGTGCG ATTAAATTAG CCTCCATGTC GAGTTCTGAT
TACATAGGCT ATTTTCCAGA ATACTATTTT GAAACCGATA AGTTTATTTT TTCTAAACCA
ATTGGTATTG GCCCATTAGG TATTGTCGAG CAAAAATCTC ATCCCATCAG TTGGCTTCAT
TTAACCGATT TGAACCGTTA CACCTTGGGT GTCGTGAAGG ATTATGTGAA TACTGATTCG
TTGGATTTGA TGATTGTTTC AGGGAATCAG CCTGTAGAAA TGGCTACATC CGATGAGCAA
AATATCAGAA AGGTGGCGGC CGGTCGTATT GATGGCGCTG TGATTGATAT TAATGTGCTG
CATTATCTAC TTAAACAACC CCATCTTCAG CCGCTTGCTG ATAAGTTGCA GGTGAATCGA
CAACTTATTG CCAATAAGCA ACTTTATGTT GCATTTCGTA ATACAGAAGA GGGGCGACGT
TGGCGGGATA CTGAAGAATC CCCTGATGAT TTTCAGATAA ATCATTAA
|
|---|
| Protein sequence | MVRWFFLLFY VGFSTLQSAQ ADTVKLTSLL WPPYAGYQLV QEGASVAVAR AAFARMDQQL
IVDFYPWSRA IKLASMSSSD YIGYFPEYYF ETDKFIFSKP IGIGPLGIVE QKSHPISWLH
LTDLNRYTLG VVKDYVNTDS LDLMIVSGNQ PVEMATSDEQ NIRKVAAGRI DGAVIDINVL
HYLLKQPHLQ PLADKLQVNR QLIANKQLYV AFRNTEEGRR WRDTEESPDD FQINH
|
|---|
| |