Gene SO_1887 details

Gene Information

• Locus tag: SO_1887
• ID: 1169652
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 1983349
• End bp: 1983951
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637343776
• Product: hypothetical protein
• Protein accession: NP_717495
• Protein GI: 24373452
• COG category: [K] Transcription
• COG ID: [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTACCAGA TTGCGATTGT GATATTTGAT GAATTTACCG ATATCGATTT CTTTTTAATG 
CGCGATATTC TCGGCCGCAC AACAACAGAT TGGACAGTCA AAGTGCTAGG CACCAAACCT 
AGCCACAGGT CGAGTTTGGG GATGACGGTT GCAACCGATG GACATGTCGC GCAAGTCGCC 
GATGCTGACG TGGTGTTATT CAGCAGTGGC TACAAAGGCG TCCCTGCCGC ACTTGCTGAT 
CCTGAGTTTA TGTCGGCCCT TAAATTAGAT CCCTCACGGC AATTACTTGG CAGTATCTGT 
GCGGGATCAT TCTTCTTTGC CAAGTTAGGC TTACTCGACA ATATCTCGGC AACGACGCAT 
CCCGATGCTA AACCCGCATT AGTGGCCATG GGCGTGGAGG TGGAAGACTC TGCTCTGGTG 
ATCAATGGCA ATATTGCTAC TGCGGGAGGT TGTCTGTCCT CACTCTATTT AACGGGCTGG 
ATTGCGGAGC GCTTATTTGA CAGAGCGAAG CGCCGCGAAA TTCATCGGCA ACTGATCCCC 
GCAGGCCAAG CCGATGTTTT TGACGCTTTA ATCGAATCCT CGATTGCCTC AGCCATTCGC 
TAA 

 

Protein sequence

MYQIAIVIFD EFTDIDFFLM RDILGRTTTD WTVKVLGTKP SHRSSLGMTV ATDGHVAQVA 
DADVVLFSSG YKGVPAALAD PEFMSALKLD PSRQLLGSIC AGSFFFAKLG LLDNISATTH 
PDAKPALVAM GVEVEDSALV INGNIATAGG CLSSLYLTGW IAERLFDRAK RREIHRQLIP 
AGQADVFDAL IESSIASAIR