| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1829 |
|---|
| Symbol | |
|---|
| ID | 1169601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | + |
|---|
| Start bp | 1921209 |
|---|
| End bp | 1922456 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637343715 |
|---|
| Product | TPR domain-containing protein |
|---|
| Protein accession | NP_717437 |
|---|
| Protein GI | 24373394 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAATG CTCATAAAAT CGCAGTTGCG TTATTACTTT CCCTTTGTGG TGGTAGTTTA
TCCGTATCTT CGGCAATTGC TGCTGAAAAA TGCGCAGTAG ATACACGCCA ATCTAAAGCG
GTAGGTGAAA GTTCGGCGAA AAAGGTGCAG AAATCCTTTG AAGCTTATTC AAATGGTCAG
CTTGATGAAG CGATTGCCAT TCTGTTAGAA GCAAACCCAA AGAATGATTT CGATAAAGCC
TATGTTGGGC GTATGCTCGG TAACTTCTAT GCCGAAAAAG GCAAGATGGA TACGGCGATC
AAGTACCTAA AACAAGCGGT TGAAGCGGAT ATTTTAGGTG GAACAGATCA TGCTGCAACA
CTGCGCCTTT ATGCCGATTT ACTGTTACAA GAGAAACAGT TCAAGGAAGC GATTCCTTAC
TATTACAAGT GGATGGAATT CACCTGTAAA ACCGATTCTC AGATGTATCG CCGTATTGGT
ATTGCTTATT CAGAACTTAA ACAGTGGGAT AAAGTGATTG AAGTGGCTGA TAAAGGTCTT
TCACTCGCAG AATCTCCTGA TAAAGGTCTG TATCAGATGA AGCTAACGTC ATACTTCAAC
CAGAAGAAGT ATAAAAATGC CGTTGGTGTG TTAGAAACCA TGGTGCCGTT ATTTCCTGAT
GACGGCAGAT TATGGGTTCA ATTAGCACAG TTTTATCTGA TGATAGAAGA CTATGATAAT
GCTCTAGCAA CTTACGATCT TGCATACCGT AATGGTTTCT TAGATACCGG AGCTAACATT
ACTCGTTTAG CTCAGCTGAT GGCTCAAAAA GGTGCGCCTT ACCAAGCAGC AAAAGTGTTT
GAGAAGCACA TGAAATCTGG CTTGATCACG CAGGATGTTA AGTCCTATGA GATTTTGGCT
GGCTTCTATC AAAACGCGAA AGAGTTTAAA GAAGCCGCTG AACTTTATGG CAAAGCAGCT
GCAATCAGCA ATGACGGTAA GCTTTATTTA AAGCAAGGTC GCTTACTGAG CTTGGAAGAG
AAATACTCTG AAGCGATACC AGTGCTTGAA AAAGCCATCT CTTTAGGTAT TGAGCATCCT
GGTGAAGCAA ACTTTGAATT GGCTTTAGCT CATTTAAGTT TGAAACAGTA TAAGTCTGCT
TATAACCGTG CAGTATTAGC GGCGAAGGAT AAGAAGACTG AGAAGAGTGC AAACAGCTAT
ATCTCTTACA TCAAAGAGAA AGCCCGTATG CATAACGTCA CGCTGTAA
|
|---|
| Protein sequence | MRNAHKIAVA LLLSLCGGSL SVSSAIAAEK CAVDTRQSKA VGESSAKKVQ KSFEAYSNGQ
LDEAIAILLE ANPKNDFDKA YVGRMLGNFY AEKGKMDTAI KYLKQAVEAD ILGGTDHAAT
LRLYADLLLQ EKQFKEAIPY YYKWMEFTCK TDSQMYRRIG IAYSELKQWD KVIEVADKGL
SLAESPDKGL YQMKLTSYFN QKKYKNAVGV LETMVPLFPD DGRLWVQLAQ FYLMIEDYDN
ALATYDLAYR NGFLDTGANI TRLAQLMAQK GAPYQAAKVF EKHMKSGLIT QDVKSYEILA
GFYQNAKEFK EAAELYGKAA AISNDGKLYL KQGRLLSLEE KYSEAIPVLE KAISLGIEHP
GEANFELALA HLSLKQYKSA YNRAVLAAKD KKTEKSANSY ISYIKEKARM HNVTL
|
|---|
| |