Gene SO_1806 details

Gene Information

• Locus tag: SO_1806
• Symbol: pspF
• ID: 1169579
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 1896559
• End bp: 1897650
• Gene Length: 1092 bp
• Protein Length: 363 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637343693
• Product: psp operon transcriptional activator
• Protein accession: NP_717414
• Protein GI: 24373371
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains
• TIGRFAM ID: [TIGR02974] psp operon transcriptional activator PspF

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGATAATA AATTTCAGCA AGACAATCTA ATCGGTCAAT CAAACGCCCT GCTTGAAGTA 
TTAGAGCATG TCTCACAAAT CGCCCCGTTA TCAAAACCAG TACTGATTAT TGGTGAACGG 
GGGACAGGTA AAGAGCTGAT TGCCGAACGC TTACATTATC TGTCTAAGCG CTGGGATCAA 
AATTTTATTA AGCTAAACTG TTCATCTTTA AGTGAAAACT TGCTTGAAAG TGAATTGTTT 
GGCCACGAAT CTGGGGCCTT TACTGGCGCC AAAGGCAAAC ACGAAGGCCG TTTTGAACGG 
GCCGATGGTG GAACGCTGTT TCTTGACGAG TTAGCCAATA CCTCAGGGTT AATTCAAGAA 
AAACTGCTGC GTGTCATCGA ATACGGTGAA TTTGAACGCG TTGGCGGCAG CAAAACGATG 
CAAGCAGACG TGCGTCTGAT CTGTGCTGCC AACGAAGATC TGCCTTCATT AGCCGAAGCG 
GGCGAATTTA GGGCCGACTT ACTCGATCGT TTGGCTTTTG ATGTTATCAC CCTGCCACCA 
CTGCGTTGTC GCCCTGAAGA TATCATGACC TTAGCGGAGT ACTTTGCTGT GGGTATGGCT 
AGGCAGCTCA AGTTAGAACT CTTTAGCGGC TTTAGTGCAA ATGCCATCGA GCAATTGATG 
AGTCATGACT GGCCCGGTAA TATCCGTGAG CTTAAAAACG TGGTCGAGCG TAGTGTTTAC 
CGTAATTATG GTGAGAATAG GCCCATTGAG CATATTATTC TCGACCCCTT CGCCTCACCG 
TACAGACCGA CAACCCGAAT TCGCACTCGA GAGCGACAAA TCACACCACT ACCTCATGTG 
CCCTTAACGA GCCCGCCTGT CGTTACCACA ATAACCGATA CAGAGGTTGT CGGAACCTCG 
GAGTCCATGA CATTCAACTT TAACTTTCCC TTAGACTTTA AAGAGCAAAC CGAGCGATAT 
GAGATGGAGC TTATTCAGCA AGCCTTATCA GCCAGTCAGT ACAATCAAAA GAAGACCGCT 
GAAATCCTTG GCTTAAGCTA CCATCAGCTG CGCGGCATCC TTAAAAAGTA CAATTTGCTC 
GATAAAGCAT AA 

 

Protein sequence

MDNKFQQDNL IGQSNALLEV LEHVSQIAPL SKPVLIIGER GTGKELIAER LHYLSKRWDQ 
NFIKLNCSSL SENLLESELF GHESGAFTGA KGKHEGRFER ADGGTLFLDE LANTSGLIQE 
KLLRVIEYGE FERVGGSKTM QADVRLICAA NEDLPSLAEA GEFRADLLDR LAFDVITLPP 
LRCRPEDIMT LAEYFAVGMA RQLKLELFSG FSANAIEQLM SHDWPGNIRE LKNVVERSVY 
RNYGENRPIE HIILDPFASP YRPTTRIRTR ERQITPLPHV PLTSPPVVTT ITDTEVVGTS 
ESMTFNFNFP LDFKEQTERY EMELIQQALS ASQYNQKKTA EILGLSYHQL RGILKKYNLL 
DKA