Gene SO_1804 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1804 
SymbolsapB 
ID1169577 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp1893833 
End bp1894864 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content44% 
IMG OID637343691 
Productpeptide ABC transporter, permease protein 
Protein accessionNP_717412 
Protein GI24373369 
COG category[V] Defense mechanisms 
COG ID[COG4168] ABC-type antimicrobial peptide transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAAAAT ACCTGCTGCG GCGCCTGAAT TTATTCCTAG CGACATCACT CGTCATGATT 
GGTGTGCTAT TTTATGCAAC TGGCCAGTTT CCAGTTGAGC GCACCTTTGC CCTGACTGGT 
ATACATTCAC CTTCAGCGAG TCAGTTGGTC CAAATTGAGC AAGACTATAA ATTAGATAGC 
AACAAAGCGA TGCAGTTTAT TGCTTATTTA CAGCAAAGAC TGGGCGGAAA TTTAGGTGTA 
TCTGTCACGT CCCATCAAAG CGTTGCAATG GAGTTGAGTA CCGTTCTCCC AGCCTCCTTT 
GAACTCGCCT TCATGGCCGC GGTGATTGCC ATTGGTTTAG GTGTTCCTTT AGGGGTTTTA 
GCATCACAGA GCCAGCATAA ACTTACCCAA AATACCATTA TGGCCATTAC CCTTACGGGC 
TACTCTGTTC CAGTATTTTG GTTAGGTTTG TATTTATCGC TGTGGTTTGG CGTCGATCTC 
GGTTGGCTGC CAATTTCGGG GCAACTCAAT CTTTTATATG AAATAAAACC TGTCACTGGT 
TTTATGCTGG TCGATATCCT ACTTTCCGAT TCGCAATACC GTATACCGGC TTTTAAGGAT 
GCGTTATTGC ATATCATTCT GCCCGCCACC ACACTCGCTG TTCTACCTTT TACCGTAGTG 
GTGCGCAGTA CACGCTCTGC GATGATGAAT GTGATGAATC AAACCTTTAT CCGCGCAGCG 
GAAGCCAGAG GTATGCATAC TAATACCATT ATTTTACGCC ATGCCTTACC AAATGCGCTT 
ATCCCTGTTT TAAAGCACTT GGGTTTAATG TTAGGCTCGT TTGCTAGCTA TGCTATTGTT 
GTGGAAGTAA TATTTTCATG GCCAGGTGTA GGTTCTTGGT TAGTATCGGG GATTTATCAG 
CGGGATTATA CAGTTATTCA AGGCGGGATC TTGGCTGTCG CCTTGCTGAT CATCTTTTTA 
AGTATTTTGA TTGAAGTGCT GCATACTGTC TTCAATCCAT TAAGCAGAAA AGATCTTTAT 
GCCTCCAGTT AA
 
Protein sequence
MLKYLLRRLN LFLATSLVMI GVLFYATGQF PVERTFALTG IHSPSASQLV QIEQDYKLDS 
NKAMQFIAYL QQRLGGNLGV SVTSHQSVAM ELSTVLPASF ELAFMAAVIA IGLGVPLGVL 
ASQSQHKLTQ NTIMAITLTG YSVPVFWLGL YLSLWFGVDL GWLPISGQLN LLYEIKPVTG 
FMLVDILLSD SQYRIPAFKD ALLHIILPAT TLAVLPFTVV VRSTRSAMMN VMNQTFIRAA 
EARGMHTNTI ILRHALPNAL IPVLKHLGLM LGSFASYAIV VEVIFSWPGV GSWLVSGIYQ 
RDYTVIQGGI LAVALLIIFL SILIEVLHTV FNPLSRKDLY ASS