| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1602 |
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| Symbol | |
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| ID | 1169398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 1678564 |
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| End bp | 1686159 |
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| Gene Length | 7596 bp |
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| Protein Length | 2531 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637343513 |
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| Product | beta keto-acyl synthase |
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| Protein accession | NP_717214 |
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| Protein GI | 24373171 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3321] Polyketide synthase modules and related proteins |
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| TIGRFAM ID | [TIGR00517] acyl carrier protein
[TIGR02813] polyketide-type polyunsaturated fatty acid synthase PfaA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCATA CCCCTTCACA GCCTCAACCT TCAACCGATA AAAAAGCCGA TAAAAGGCTA
AATAAACGCT TGAAAGATAT GCCCATTGCC ATCGTTGGTA TGGCGAGTAT CTTTGCAAAC
TCACGCTATT TAAATAAGTT TTGGGATTTA ATTTGCGACA AGATTGATGC CATTACCGAC
GTGCCAGCCA GCCATTGGGC GATTGATGAC TATTACGACG TGGATAAATC CAAGGCCGAT
AAAAGTTACT GCAAGCGCGG TGGCTTTATG CCAGAGGTCG ACTTCAATCC TATGGAGTTT
GGTCTGCCGC CCAATATTTT GGAACTCACC GACAGCTCAC AATTGCTTTC CCTCGTCGTA
GCCAAAGAAG TGCTGCAGGA TGCCAATCTG CCAGACGATT ACGACCGTGA CCGCATCGGT
ATCACCCTTG GGATTGGCGG CGGGCAAAAG CTAAGCCATA GCCTCAACGC GCGCCTGCAA
TATCCTGTGC TTAAAAAAGT ATTTAAAAGC AGTGGCCTGA GCGATGAAGA TAGCGAGCTG
CTGATCAAAA AATTCCAAGA CCAATATGTC CACTGGGAAG AAAACTCCTT CCCCGGCTCC
CTTGGCAACG TGATTGCCGG ACGCATCGCC AACCGTTTCG ATTTAGGTGG AATGAACTGC
GTCGTCGATG CCGCCTGCGC AGGATCGCTT GCCGCCATGC GTATGGCGCT CACCGAACTG
ACCGAAGGTC GCAGCGACAT GATGATCACC GGCGGTGTCT GTACCGACAA CTCGCCTTAC
ATGTATATGA GTTTCTCAAA GACACCCGCC TTTACCACCA ACGAGCAAAT CCAACCCTTC
GATATCGACT CTAAGGGCAT GATGATTGGC GAAGGCATCG GCATGGTCGC CTTAAAACGC
CTCGACGATG CCGAGCGCGA TGGCGACCGT ATTTATGCGG TAATCAAAGG CGTAGGCGCC
TCATCGGACG GTAAATTTAA GAGCATTTAT GCGCCGCGCC CCGAAGGCCA AGCCAAGGCA
CTAGAGCGCG CCTATGATGA CGCGGGCTTT GCGCCGCACA CTGTTGGCTT GATTGAGGCC
CACGGCACAG GCACAGCCGC AGGCGATGTA GCGGAATTTA CTGGTTTAAG CTCAGTGTTT
TCTCAGGATA ACGCGCAGTT ACAGCATATC GCCTTAGGCT CAGTCAAATC TCAGGTGGGC
CACACTAAAT CCACCGCGGG CACGGCGGGT GTGATTAAGG CCGCGCTGGC ACTGCACCAT
AAAGTATTGC CACCCACGAT TAACGTCAGC AAGCCCAATC CTAAGCTTGA GATTGATCGC
TCGCCCTTTT ATCTCAATAC CGAGGCGCGC CCTTGGATCC AACGCAGTGA TGATACGCCG
CGCCGCGCTG GGATAAGCTC CTTCGGTTTT GGTGGCACAA ACTTCCATTT AGTACTCGAA
GAATACCGCC CAGATCACAC GCGCGATGAC GCCTATCGTC AACGCAGCGT GGCACAAATC
CTACTGTTTG CGGCTAACGA TAAAACCTTG CTACTGAACG AGTTAAAAGC TGTTTTACAA
CAAGCAAGCT CAGCTAAGGC GGAGCTTTCT GAGGCGCATT TTATTCAGTT TGCTAAACCC
TACGCCCTGC GAGAAATTAC GCCGCAATCG GCCCGTCTTG GCTTTATCGC CAAAGACTAT
GCCCAGTTAC AGACTCTGTT AACCCAAGCG ATAGCGCAGC TTGAAGCCAA TAACGCTGAG
AGCTGGCAAT TACCTTCTGG GATCAGCTAC CGCGCCAAGG CCTTAGTCAA TGAGCAAACC
AAGATCGCCG CGCTATTTGC TGGTCAAGGC GCGCAGTACC TGAATATGGG ACTGGAGCTT
GCCAATAACT TCCCCGAGCT TCGCCGCCAT ATCCACGCCA GCGATAAAGT GTTTAGTACC
CATGGTAAGC CTGCGCTTTC AAGCGTGCTC TATCCTATTC CAGCCTTTGA TGATGAGTCG
ATAAAAGCGC AGGAAACGGC ATTAACCAAC ACTCTGTATG CCCAAAGCGC CATCGGCGCG
CTCTCAATGG CGCAGTACGC CCTGTTTACT CAGGCAGGTT TCGCCCCAGA TATGCTGGCT
GGTCATAGCT TCGGTGAGCT TTCGGCCCTG TGCGCCGCAG GGGTTATCTC AATGGATGAC
TACATCAAAC TTGCCTTTGA GCGTGGACAG GCGATGGCGC AGTCATCCCA AGATACCGAT
GCGGGTGTTA TGTATGCAGT GATCCTTAAG CAAAAACAAG ATATTGAGGT AATCAACGGT
TGCCTTGCGC AGTTTGAAGG CGTCAAAGTT GCCAACTACA ACTCACCCAC TCAGCTGGTG
ATTGCAGGCG CTAGTGCCGC CACCCAACAG GCGGCTAAGG CCATTAGCGA GTTAGGCTTT
AAGGCGATTG CCCTGCCCGT TTCTGGCGCC TTTCACACGC CATTGGTTGC CCATGCACAA
AAGCCCTTTA GTGCAGCCAT CGATAAGGCT CAGTTCAACA CGCCAAAGAT TGCCTTATAT
GCCAATGGCA CAGGCCAGCT GCATCCTATC GATGCCAACG CCATCAAAGC TGCCTTGAAA
GATCATATGT TGCAATCGGT GCACTTTAGC GAGCAGCTAG AAGCCATGTA TGCCGCAGGC
GCACGGGTGT TTGTCGAGTT CGGCCCAAAA AACATTCTGC AAAAGTTAAC TGAAAATACC
CTCGCGGCGC AGTTAAACGA GCTGTGTATT ATCAGCATTA ACCCTAATCC CAAGGGCGAT
AGTGACAGCC AACTGCGCAG CGCCGCAGTG CAACTGGCGG TGGCGGGGGT AAAACTCCGC
GAGATTGATC CGTATCAAGC AGAGTTAATT GCCCCAGCAG CAACATCGGC CATGAATATA
AAACTCAATG CCACCAACTA CATCAGCCCA GCGACCCGCA GCAAAATGGT CGATTCGCTG
CAATCGGGCA AAATTACCAG CCAAGTGCAG TATGTGGATC GCATCGTTGA AAAAGTGGTT
GAGAAAGTTG TTGAAAAACC AGTGATTGTC GAAAAAATTC TAGAAAAGGT TGTCGAAGTG
GAAAAGCCCG TGGCACAAAA TAGCAATAAT ATTCAACAGC AAACGCCTGC ACAGCCAGCC
AGCTTTACCG CTGGACAGAC GAATCAAGAT GCCCTGAGCG CCTTTTTTGC CGCCCAAACC
CAGGCAGCGC AATTACATCA ACAATTTTTG GCCATTCCGC AGCAATACGG CGATACAGTC
AGCGCACTGA TGGCAGAGCA AGCCAAAATG GCAAGCCTTG GGATCGCTAT TCCAGAGAGC
CTACAACGCT CAATGGAACT GTTCCATCAG CACCAAGCGC AAACCCTAAA AAGTCATAGT
GACTTTATGC AATTGCAAAC CAGCAGTAGC CAAGCAGTAC TGGCATTATT AGGTCAAATG
CCAGCGTCTC AGGTTCAAGC CCCCATTCAA GCCGCTGCAC CAGTGGCAGT AGCAGTGACA
AAACCTGTCG TTCCAGCACA GGCCCCCGTG GTTCAAGGGT TGGCCGCAGA GCCTAAAGTG
ACTGCTGTGC CTGTGAGCGA GCCCACAGTT CAGCAACCTC AAGTAGCACT GGCACAAGTA
GCACAGACAA AAGTAACTCA GCCACCATTA GCGCAACCAC AAGTACAAAC TGTGGCCGCA
CAAACCAGTG CGCTTCAAGT AAAGCCTGCC TTGCAGCAAA TCGAGCACGC TATGCTCTCA
GTGGTGGCAG ACAAGACCGG CTATCCGGTT GAAATGTTAG AACTTAGCAT GGATATGGAA
GCGGACTTAG GGATCGACTC CATTAAGCGC GTAGAAATTC TAGGCACAGT GCAGGATGAA
TTACCGAACC TGCCAGAACT CAGCCCAGAA GATTTAGCCG AGTGCCGCAC CCTAGGGGAA
ATTGTGGCGC TATTTAGCCA AGCAGCTCCT GTAACATCTG CGACCACTGT TAGCCATGCT
ACACAAAGTG CCGTAGCCGC AAGCGCGGCG GTTTCCAATG ATGAGATTGA GCGCACTATG
ATGGCGGTCG TGGCCGACAA GACTGGCTAT CCCGTTGAAA TGCTGGAACT CAGCATGGAT
ATGGAAGCCG ACCTTGGCAT TGACTCCATT AAGCGCGTGG AAATTCTAGG CACAGTGCAG
GACGAATTAC CCAACCTGCC AGAACTGAGC CCAGAAGATT TAGCCGAGTG CCGTACCCTA
GGGGAAATTG TGGCGCTATT TAGCCAAGCC GTCCCAGTGG CAGCACAAAC CTTTGCAGCC
ATGGCAGCAA CGAATCCTCA GGTTGTCGCC TCTGCCGTCA CGCCAATTGC GGCCGTATCC
GATGGCGAGA TTGAGCACAC TATGATGGCG GTTGTGGCCG ATAAAACCGG TTATCCCGTT
GAAATGCTGG AACTCAGCAT GGACATGGAA GCCGACCTTG GAATTGACTC CATTAAACGG
GTGGAGATTT TAGGCACGGT GCAAGATAAG CTGCCAAATC TGCCGGAACT CAGCCCAGAA
GATTTAGCCG AGTGCCGAAC CTTAGGGGAA ATTGCGGCGC TCTTTAGCCA AGCGGCTCCT
GTAACAGCTG CGGCCACAGT TAGCCATGCG ACACAAAGTG CAATAGCTGC AAGGGCGGCG
GTTTCTAATG ATGAAATTGA GCGCACTATG ATGGCGGTTG TGGCCGATAA AACCGGTTAT
CCCGTTGAAA TGCTTGAGCT AAGCATGGAC ATGGAAGCCG ACCTTGGTAT CGATTCCATT
AAGCGCGTGG AAATTCTAGG CACAGTACAA GACCAACTGC CAAACTTGCC AGAACTCAGC
CCAGAAGATT TAGCCGAGTG TCGTACCTTG GGTGAAATTG TCGCCCTCTA TGCTGGTTCG
CAATCATCAA GTGAGGCGCT ACAACAAAAC CATGCTGCGA CAATTCAAGA GACTCAAGAG
GCTATTGCAA AAACCGTCGA GGAAACCATC GACCTGCCGC CCCATAGTGA GGTGATGCTA
AAAAAGTTGC CAGCGGCGGC TGAGTTAGCG CGCATCATCG CAACTAGCGA TGTTCAACTG
ACGGCAAACA GTTACGTCGT TATCGGCGAC GATGGCCACA ACGCGGGGGT GATTGCCGAA
AAGCTTCACG CCCAAGGTGT TAAGGTCGCG GTTGTACGCT CACCTAAAAC GGTTGTGACC
AGCGCATCGC CACTCGATAG CCATATTGCC AGCTTCACGC TGGAGGCTAT TGATGATGAA
AGCATTTGTG AGGTCATCAA TCAGATTGAA GCGCTTGGCC AAATCGCCGG TTTTATTCAT
CTGCAGCCAC AGCATAAATC CGTTGCCGAT AAAGGTGCTG GCTTAGTGCT GGTAGATGAA
GCCAAAGCTT CGGTCGAGCA AGCCTTCTTG TTCGCCAAAT TCTTACAACC GCTTTTAACT
GAACGTGACT ATTGCCGCTT TGTCACCGTC AGCTGTATAG ACGGTGGCTT TGGCTATATC
GGCATGGACG AGTCGGTAGG TGCCCTCATC AGCCAGAGTG AACTCAACCA AGCGGCGCTC
TTTGGACTCA CTAAAACCTT AAATCACGAG TGGCCGGGAG TGGTCTGCCG CGCGCTGGAT
ATCGCGCCAA ACTTGGACGC TAAAACGGTC GCCAATGCGG TGGTGCAGGA ATACTACCTT
CAAGATGCGC CGGTCGAAGT CGGTATTGAT AGCAACTTTG ATCGCGTGAC ATTAGTTGCA
GGCACCGCTG CACTTCGCCA TCCACCCGCC GTCCTTAGCA ATGCAGATAA AATACTGGTC
ACGGGCGGTG CTAAAGGTGT CACTTTTGAA TGCGCCTTAA GCTTAGCAAA ACGCTGTCAG
GCACATTTTT TCCTCGCTGG CCGTAGCGCC CACCAAGTGA TCCCTGCATG GGCAGAGGGA
AAAAAGAGCA ACGAACTCAA AGCCGCAGCC ATTGCGCACC TGCAAAGCCT TGGTGATAAA
CCCACACCAA AACAAGTGGA CGCCTTAGTA TGGCCCGTGC AGAGCAGCCT TGAGATCAGC
CATGCTTTAG CCGCCTTTGA TGCCATTGGC GCCAGCGCTG AGTACTTAAG TGTGGATGTC
AACGACCCTG CGGCCATTGC CAGCACCATT GCGCCCATTA ACGCACTATC GCCTATCACT
GGGATTATTC ACGGTGCGGG AGTTCTAGCC GATAAACATA TTCAAGACAA GACCTTAAAT
GAATTTGAAC GTGTCTATGG TACTAAGGTC ACCGGGCTTA ATAATCTGCT GTCAACGCTG
GATCTTAGCC AAGTAAAACT GATTGCACTG TTCTCTTCGG CGGCGGGTTT TTACGGCAAT
ACCGGCCAGA GCGACTACGC CATGTCTAAC GACATTCTCA ATAAAGCCGC GCTGCAACTT
GCGCAGCAAT TACCACAAGC CAAGGTGATG AGCTTCGACT GGGGTCCTTG GGATGGCGGC
ATGGTCAATC CAGCGCTGAA AAAAATGTTT ATTGACCGCG GGGTTTATGT CATTCCACTC
AAAGCGGGTG CCGAGTTATT TGCCAGCCAA TTATTGAGTG ATACAGGCGC ACAGCTGTTG
GTCGGAACCG ATATGCAGGG CAATACCGCC AATGCCGTTG AAGTTGCATC AGCAAAAAAG
CCTGAAGCGG ATCTAGCCAC AGCGTTAGAT CCGCAGCCTA TGGCCCAAAC GGTGCCGCAG
AGCATTCGCG TCATGCGCAG CCTCGACCCT AAACGCATGA GCTTTATTGA GGATCATTGC
ATCAATGGTC ATGCGGTGTT GCCAACGGTA TGCGCCATCG ATTGGATGCG TGAGGCCGCC
AAGGCCCATT TAGGTACGGC GGTGAGTGTC AGCGATTATC GACTGCTCAA GGGAGTAATC
TTCGATGAGG CGCTGCTTGC ACGCAATGCG CCTATTGAGC TCGAATTGAT GCTCACGCCG
CTTGCTGACG CTGCACAACA ATCGACTGAG GCGTTAGCCG CGCTGATAAG CTTTGAAGGT
CGCCCGCAGT ATCAGGCGGT GTTAGTGGCG CAGACGGATG ATATGCCAGA CGCGCAGCGT
TTCGAGGTTG GCGAGTTGCA TTCTCTGATA CAGGAGATGG CACAGCAACC CGCTATCGCG
AACCGCGAGT CGCTCTACAG CGATGGCACC TTGTTCCATG GCCCGAGACT GCAAGGCATA
AGCGAAGTGC TCACCTTTGA TGACCAACAT CTTATGGCCA AAGTAGAACT GCCACAGGTG
GCCTTAGACG ACTGCGGCAA GTTTGCGCCA AAGCTTGAGG ATAAGGGTAC ACAACCCTTT
GCCGAAGATC TGTTATTGCA GGCCATGCTC GTGTGGGCTC GCCTTAAATA TCAAGCGGCA
AGCTTACCCA GCACGATTGG CGAGTTTGTT TCCTATGCGC CCTTGAGCTT TGGTGAAAAG
GCAGTATTAG TGCTGGATGT GCTTAAGCAC TCGTCCCGCT CGCTTGAGGC GAATATTGCC
CTCTACCATC AGGATGGCCG TTTAAGCTGC GAGATGAAAC GAGCAAAAGT CACGATCAGT
AAGACGCTTA ACCAAGCATT TTTGGCTAAT AAACCTCAAC AACTGGCGCA AGTGCAGGCA
TCAATCCAAA ACATGGCCGA GGTAAGTGTT AAGTGA
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| Protein sequence | MSHTPSQPQP STDKKADKRL NKRLKDMPIA IVGMASIFAN SRYLNKFWDL ICDKIDAITD
VPASHWAIDD YYDVDKSKAD KSYCKRGGFM PEVDFNPMEF GLPPNILELT DSSQLLSLVV
AKEVLQDANL PDDYDRDRIG ITLGIGGGQK LSHSLNARLQ YPVLKKVFKS SGLSDEDSEL
LIKKFQDQYV HWEENSFPGS LGNVIAGRIA NRFDLGGMNC VVDAACAGSL AAMRMALTEL
TEGRSDMMIT GGVCTDNSPY MYMSFSKTPA FTTNEQIQPF DIDSKGMMIG EGIGMVALKR
LDDAERDGDR IYAVIKGVGA SSDGKFKSIY APRPEGQAKA LERAYDDAGF APHTVGLIEA
HGTGTAAGDV AEFTGLSSVF SQDNAQLQHI ALGSVKSQVG HTKSTAGTAG VIKAALALHH
KVLPPTINVS KPNPKLEIDR SPFYLNTEAR PWIQRSDDTP RRAGISSFGF GGTNFHLVLE
EYRPDHTRDD AYRQRSVAQI LLFAANDKTL LLNELKAVLQ QASSAKAELS EAHFIQFAKP
YALREITPQS ARLGFIAKDY AQLQTLLTQA IAQLEANNAE SWQLPSGISY RAKALVNEQT
KIAALFAGQG AQYLNMGLEL ANNFPELRRH IHASDKVFST HGKPALSSVL YPIPAFDDES
IKAQETALTN TLYAQSAIGA LSMAQYALFT QAGFAPDMLA GHSFGELSAL CAAGVISMDD
YIKLAFERGQ AMAQSSQDTD AGVMYAVILK QKQDIEVING CLAQFEGVKV ANYNSPTQLV
IAGASAATQQ AAKAISELGF KAIALPVSGA FHTPLVAHAQ KPFSAAIDKA QFNTPKIALY
ANGTGQLHPI DANAIKAALK DHMLQSVHFS EQLEAMYAAG ARVFVEFGPK NILQKLTENT
LAAQLNELCI ISINPNPKGD SDSQLRSAAV QLAVAGVKLR EIDPYQAELI APAATSAMNI
KLNATNYISP ATRSKMVDSL QSGKITSQVQ YVDRIVEKVV EKVVEKPVIV EKILEKVVEV
EKPVAQNSNN IQQQTPAQPA SFTAGQTNQD ALSAFFAAQT QAAQLHQQFL AIPQQYGDTV
SALMAEQAKM ASLGIAIPES LQRSMELFHQ HQAQTLKSHS DFMQLQTSSS QAVLALLGQM
PASQVQAPIQ AAAPVAVAVT KPVVPAQAPV VQGLAAEPKV TAVPVSEPTV QQPQVALAQV
AQTKVTQPPL AQPQVQTVAA QTSALQVKPA LQQIEHAMLS VVADKTGYPV EMLELSMDME
ADLGIDSIKR VEILGTVQDE LPNLPELSPE DLAECRTLGE IVALFSQAAP VTSATTVSHA
TQSAVAASAA VSNDEIERTM MAVVADKTGY PVEMLELSMD MEADLGIDSI KRVEILGTVQ
DELPNLPELS PEDLAECRTL GEIVALFSQA VPVAAQTFAA MAATNPQVVA SAVTPIAAVS
DGEIEHTMMA VVADKTGYPV EMLELSMDME ADLGIDSIKR VEILGTVQDK LPNLPELSPE
DLAECRTLGE IAALFSQAAP VTAAATVSHA TQSAIAARAA VSNDEIERTM MAVVADKTGY
PVEMLELSMD MEADLGIDSI KRVEILGTVQ DQLPNLPELS PEDLAECRTL GEIVALYAGS
QSSSEALQQN HAATIQETQE AIAKTVEETI DLPPHSEVML KKLPAAAELA RIIATSDVQL
TANSYVVIGD DGHNAGVIAE KLHAQGVKVA VVRSPKTVVT SASPLDSHIA SFTLEAIDDE
SICEVINQIE ALGQIAGFIH LQPQHKSVAD KGAGLVLVDE AKASVEQAFL FAKFLQPLLT
ERDYCRFVTV SCIDGGFGYI GMDESVGALI SQSELNQAAL FGLTKTLNHE WPGVVCRALD
IAPNLDAKTV ANAVVQEYYL QDAPVEVGID SNFDRVTLVA GTAALRHPPA VLSNADKILV
TGGAKGVTFE CALSLAKRCQ AHFFLAGRSA HQVIPAWAEG KKSNELKAAA IAHLQSLGDK
PTPKQVDALV WPVQSSLEIS HALAAFDAIG ASAEYLSVDV NDPAAIASTI APINALSPIT
GIIHGAGVLA DKHIQDKTLN EFERVYGTKV TGLNNLLSTL DLSQVKLIAL FSSAAGFYGN
TGQSDYAMSN DILNKAALQL AQQLPQAKVM SFDWGPWDGG MVNPALKKMF IDRGVYVIPL
KAGAELFASQ LLSDTGAQLL VGTDMQGNTA NAVEVASAKK PEADLATALD PQPMAQTVPQ
SIRVMRSLDP KRMSFIEDHC INGHAVLPTV CAIDWMREAA KAHLGTAVSV SDYRLLKGVI
FDEALLARNA PIELELMLTP LADAAQQSTE ALAALISFEG RPQYQAVLVA QTDDMPDAQR
FEVGELHSLI QEMAQQPAIA NRESLYSDGT LFHGPRLQGI SEVLTFDDQH LMAKVELPQV
ALDDCGKFAP KLEDKGTQPF AEDLLLQAML VWARLKYQAA SLPSTIGEFV SYAPLSFGEK
AVLVLDVLKH SSRSLEANIA LYHQDGRLSC EMKRAKVTIS KTLNQAFLAN KPQQLAQVQA
SIQNMAEVSV K
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