| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1580 |
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| Symbol | |
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| ID | 1169383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 1656634 |
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| End bp | 1658847 |
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| Gene Length | 2214 bp |
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| Protein Length | 737 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637343499 |
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| Product | TonB-dependent heme receptor |
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| Protein accession | NP_717193 |
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| Protein GI | 24373150 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein
[TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGTATC AACCTAAGAT AGGGATATCT AAAACAATGA TTGGGTGTTT AGGCTTATGT
GCGTTACCTG CCTTGCCACT TAATGCCAAA GAAGTATTAG GTGCGCCTAA AGTCGAGCCA
ATTGAGATCT TAACGGTCCA TGGTCAGCAA TATCGTCGGG CGACGACCAT GACTAAGCCG
GGAGAAGCGA TCATCTCGAT GGCTGAAATT GAAGAGATGC AAGCGACCAC ATTTGCCGAG
GTCATTGATG ATATGGCGGG AGCCCATATT GATGGTGGCA CCCGCAGCGG TGGCGAGCGT
ATCAATGTGT GGGGATTTGG TGAAACCGAA GATTTTAACG TTTATGTGGA TAATGCCCCC
GTGGGGTTTG AGCAATATCG TTATGGGTCG TTTTTCTTAG ATCCGGATTT AATTAAACGG
GTAGAAGTGA TTAAGGGCGC CCACGATGTT CGTTCTGGCA ACGGCGGTTT TGGTGGCGCT
ATGTATGTTG TCACTAAATC GGCGGATGAT TTTTTAAAAT ATGACCAAAG TGTTGGTGCT
AGGGTTAAAG CCAGTTACGC CAGTAATAAC GACGCCCAAA GCTATACGGG AACGGTTTAT
GGACGAGCCA ATCAACAACT TTCTGGCTTA TTGCATTTCA CCCGTCGCGA TGCGCAAGAT
GTGACGCTCG CCAATGGCGA AGCATTCGAA TACTCAGGTT ATGAGCAAAA TAATTACCTA
GGTAAAGTTG ATTATGAGCA GGGCGATCAT CAACTTATGC TAAGCGTGAC CCATTATTTG
GATGAAGGTC GTAAGCCTTG GGCCAATCGT CGTGGACCCA TGCCCGCGAT TTCTGACTTT
AATATTCGTA AATACGGTTC TTATGAACAG GCACTTTATG CCACAACGGC CTACAACACC
TATGAAGACA ATACTTGGTC GGCCAATTAC CGTTACTCAC CCAGCAATCC GTTGATTGAT
ACACAAATTG TAGTGTCCCA TTCTGCCAAT GCGCGGCATT GGATTCGCCC GCCGATTGCT
TGGGAGAAAA TGACGGTATC GGTGGGCAAT TTCGGCCATG AATCTTGGTT GGATTACAAA
CGTGATTATA TCGACATCAA TAACTTAAGT GTTGTTGGTG CCCATGAAAT TACCGCAGGA
TTGCAGTTTC GGAGTCTCGA TAGGACTTCA TTAGTCTTTA ATAAAAGCTA TGAGAAAAAT
CCTGAGAAAA ACTTCGGCTG GTATACTCCT TATTATCAGC CTGAGGGACG TCAAGATACT
TATGCGGCCT ATCTGCGAGA TGCGATAAGC CTAACAGATG ATCTGACCAT AACCCCTTCA
TTACGATATG ATTTTGTCTA CAGTGTTGGT AAGCCTAATA TTGCCCCCGA CTATAATGAT
ATTGCTGCTG GGCATGATTA TAGTTCGACT CACCACTCAG GCTTTTCACC AAGATTGGGC
GTGGATTACC AATTAACACC CAATACCCGA GTGAATTTTG ATTACGCTTA CAGTTTACAG
GCGCCTGTTG TCGATGAAAT TTATGCGGTG CAATATGCCA AGGCCAGCAT TACGGCCACG
AGCCGCGATA TCGAGGTTGA GCGTTTACAT GCCTTTAAAT TGGGCTTGAT TAACCAGCAA
ACCGATCTTT TTGCCGATCA AGATGCGCTT TCAACCCAAA TCACCGTATA CGCTAACCTT
GGACGCGATG ATATTGCCCA GCGCCGTGGG GCGAAGTCCG ATCCAAATCA AGCCATACAA
AGCGGCTATA CCAATCTGGA TGGTTATGAA ATTTACGGTG CCGATCTGGA GTCTCAATAC
CGTTATCAAG ACTTTTTCAG TGATTTAGCC GTATCTTGGT TACAAGGAGA GCATCGTGGC
TCACTGAAAG ACAGCTTAGG TGAAGACGAA TACTTAGCTA ATATTGCCCC ATTAGATATT
CAACTCCGTG TGGGTATGTA TATTACCGAT TCCATTTCAG TGGCTTGGCA GGGCACTTGG
TATGATGCAC AGGATAATGT GCCTGAAGGT GATATTTTTA ATGCAGAATC CCCAAGTGAG
AATTACTTTC TACAAAATAT ATACCTAGCC TATGAACCCC TCGATAGTTT AAAAGGGCTG
AGTATACGTT TAATGGCAAA AAATCTCACA AATCAGCAGG TGACGCCGTT TTTATCGGAC
GGTATTCCCG CCCCCGGACG TGATGTCAGA CTTAGCTTAG CCTATGAGTT TTAA
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| Protein sequence | MGYQPKIGIS KTMIGCLGLC ALPALPLNAK EVLGAPKVEP IEILTVHGQQ YRRATTMTKP
GEAIISMAEI EEMQATTFAE VIDDMAGAHI DGGTRSGGER INVWGFGETE DFNVYVDNAP
VGFEQYRYGS FFLDPDLIKR VEVIKGAHDV RSGNGGFGGA MYVVTKSADD FLKYDQSVGA
RVKASYASNN DAQSYTGTVY GRANQQLSGL LHFTRRDAQD VTLANGEAFE YSGYEQNNYL
GKVDYEQGDH QLMLSVTHYL DEGRKPWANR RGPMPAISDF NIRKYGSYEQ ALYATTAYNT
YEDNTWSANY RYSPSNPLID TQIVVSHSAN ARHWIRPPIA WEKMTVSVGN FGHESWLDYK
RDYIDINNLS VVGAHEITAG LQFRSLDRTS LVFNKSYEKN PEKNFGWYTP YYQPEGRQDT
YAAYLRDAIS LTDDLTITPS LRYDFVYSVG KPNIAPDYND IAAGHDYSST HHSGFSPRLG
VDYQLTPNTR VNFDYAYSLQ APVVDEIYAV QYAKASITAT SRDIEVERLH AFKLGLINQQ
TDLFADQDAL STQITVYANL GRDDIAQRRG AKSDPNQAIQ SGYTNLDGYE IYGADLESQY
RYQDFFSDLA VSWLQGEHRG SLKDSLGEDE YLANIAPLDI QLRVGMYITD SISVAWQGTW
YDAQDNVPEG DIFNAESPSE NYFLQNIYLA YEPLDSLKGL SIRLMAKNLT NQQVTPFLSD
GIPAPGRDVR LSLAYEF
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