Gene SO_1538 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1538 
Symbol 
ID1169346 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp1611929 
End bp1612936 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content48% 
IMG OID637343465 
Productisocitrate dehydrogenase 
Protein accessionNP_717154 
Protein GI24373111 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAAAAA GAACGATAAC CGTAATTCCA GGTGATGGAA TTGGCCCAAG TATTATTGAT 
TCAGCCTTAA AAATTCTTGA TAAAGCAGGT TGTGATTTTG AATATGAATT TGCCGATGCT 
GGTTTAGCAG CACTCGAAAA ACAAGGCGAG TTACTTCCGC AGCGTACTTT AGAACTGATT 
GAAAAAAACC GCATCACTCT GAAAGGCCCG CTGACTACAC CAGTGGGTGA AGGCTTTACC 
TCTATCAACG TGACATTACG TAAAAAATTC GGCCTGTACG CGAACGTGCG CCCAGTGTTG 
TCTTTCAAAG GCACCCAAGC CCGTTATGAA AACATTGATA TCATCACAGT GCGTGAAAAC 
ACCGAAGGTA TGTATTCAGG CCACGGTCAA AAAGTGTCAG AAGACGGTAG CACAGCTGAA 
GCCACCAGTA TTGTCACTCG CCAAGGTGCC GAACAAATCG CGACCTTTGC CTACGAACTG 
GCCCGTAAAG AAAGCCGCAA GAAAGTCACT ATCGTGCACA AGGCAAACAT CATGAAGTCA 
ACTTCAGGTC TGTTCCTGAA AGTAGCTCGT GAAGTAAGCC TACGCTATCC AGATATCAAA 
ACCGAAGAAA TGATCGTCGA TGCGACTTGC ATGAAGTTAG TAATGAACCC AGAAAACTTT 
GATGTGATCG TGACCACTAA CCTGTTTGGT GACATTCTGT CGGATCTGTG TGCGGGTTTA 
GTCGGTGGTT TAGGTATGGC ACCAGGCGCC AACATTGGCC GTGATGCAGC GATTTTCGAA 
GCGGTTCACG GCAGCGCGCC AGATATCGCA GGTAAAAACC TCGCGAACCC AACCTCAGTG 
ATCTTGGCCT CTATCCAAAT GCTGGAATAC TTAGGTATGG CCGATAAAGC GGCTCCGATC 
CGTAAAGCGG TATCTGCTGT GATTGAAGAA GGCGACCGTA CGACTCGCGA TTTAGGCGGC 
ACCCACGGCA CAACTGACTT CACACAAGCG GTGCTTGACC GTCTGTGA
 
Protein sequence
MSKRTITVIP GDGIGPSIID SALKILDKAG CDFEYEFADA GLAALEKQGE LLPQRTLELI 
EKNRITLKGP LTTPVGEGFT SINVTLRKKF GLYANVRPVL SFKGTQARYE NIDIITVREN 
TEGMYSGHGQ KVSEDGSTAE ATSIVTRQGA EQIATFAYEL ARKESRKKVT IVHKANIMKS 
TSGLFLKVAR EVSLRYPDIK TEEMIVDATC MKLVMNPENF DVIVTTNLFG DILSDLCAGL 
VGGLGMAPGA NIGRDAAIFE AVHGSAPDIA GKNLANPTSV ILASIQMLEY LGMADKAAPI 
RKAVSAVIEE GDRTTRDLGG THGTTDFTQA VLDRL