| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_1408 |
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| Symbol | |
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| ID | 1169227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 1462811 |
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| End bp | 1465774 |
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| Gene Length | 2964 bp |
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| Protein Length | 987 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637343350 |
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| Product | helicase, putative |
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| Protein accession | NP_717028 |
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| Protein GI | 24372986 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1061] DNA or RNA helicases of superfamily II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAGAAC AACAAACCTC ACTCTACTCA GGCAAAAAAC TGTCCTACGG CGGTGCAAAC
GATCCCTTGC TACCAAGGCT GATCCAAGCC ATTAATCACG CCAGTGAAAT CGAAATTTCC
GTCTCGTTTA TCCAACCGTC AGGTCTCGAT TTACTGTTTG ATCCGCTGCT TGATGCCTTA
CAAAGTGGTG CGAGCTTAAA ACTGCTAACG TCGGATTATC TCTGCATCAG CCATCCTGTT
GCCCTGCGCC GTTTGATGCT ACTGGCCGAA CGTGGTGCCC AGTGCAAAAT ATTTGTGTGC
GGCCAGCAAA GCTTTCATAT GAAGTCGTAC ATTTTTATCC GTAGTGAGCA GGATGAAATA
ATCGAAGGTT GCGCATGGAT AGGCTCTAAT AACATCAGTA AAACCGCGTT ATTACACAGC
CATGAATGGG CCTTACGCCA TGATTTTGAG CTGCCACTCA CCTCACCCGC AGCGCTTGAG
TTTGCCCATA TCCGTAAGCA GTTTGAGGCG ATTTTTAACC ACACTGAGAG TCAGGTGCTG
ACCCATGTGT GGATCGACAG CTACCTTAGT CGCTACCAAC ACACGAAGCA ACAACGGGGG
ATTGCCGCCG TTAGTCTTTA CGAAGAACAA GAACATATCG AGCCGCCAAC GCCCAATGCC
GTACAAATGG AGGCATTAGC AGCACTGAAG GCGAGCCGTG AACAGGGTTT CACCAGAGGA
TTAGTAGTAC TGGCAACGGG CATGGGCAAA ACCTGGTTGG CCGCATTTGA TACCCTGCAA
ACTGCAGCCA AAAAGGTACT ATTTGTTGCC CACCGAGAAG AGATCCTTAT TCAAGCGGAA
AAGACCTTTA ACCAATTGGT GCCTGAAGCA AAAACAGGTT CGTATAATGG CTTGAATCAA
GATGAAAAGA CGGACTATCT GTTTGCATCG GTAGCCACCC TTGGCAAGCT ACAGCATCTA
CAGCGCTTTG CTGCCGATCA TTTCGATTAT ATTGTGGTGG ACGAATTCCA TCACGCGGCA
GCCAAAAGCT ATCGCCAACT GCTGGCCTAT TTTCGTCCCC AATTTCTCCT TGGTTTAACC
GCCACACCAG AGCGTTCGGA TCAAGCGGAT ATCCTTAGTT TATGCGATAA CAATCTGGTG
TTTGAACGCA ATCTAGTGCA TGGCATTGAT GGGAAGTTAC TGGTGCCGTT TGATTATCAC
GGCATTTACG ATCAAGCGGT CAATTATCAA GACATCCCTT GGCGAAACGG CAAGTTTGAT
CCCGATGCTT TGGATAATGC CCTTGCCACC CAACGCCGCG CAACCCATGT TCTGCATCAT
TGGCAGCAGA GTAAGCAAAG TCGCACCTTA GCCTTTTGTG TCTCCAAAAA ACATGCTGAC
TTTATGGCCA AGTATTTCAC CAGCAAAGGC ATTAACGCCA TCGCCGTTTA CAGCGACTCA
AAAGTGCGCC GTAATCAAGC ACTGCAATGG TTAGCGCAAG GAAGTATCGA GGTTATTTTC
TCTGTCGATT TATTTAATGA AGGCACGGAT CTGCCAGCGA TTGATACGAT TTTGATGATC
CGTCCAACCG AGTCAAAAAT CCTGTTTTTG CAGCAGTTAG GTCGAGGGTT GCGTCTTAGC
CATCAAACCC AAAAGCAAAA ACTGGTTGTG CTTGATTTTA TTGGTAATCA CGAGTCATTT
TTAAATCGGC CGACAACACT GTATAACCTT GGCAGTCTGC GGGAAGTATT AAGAAATCTC
AATCAAGTCA ACGCGCTACC CAAAGGTTGT CATGTCAATT TTGATCTGGA ACTGATTGAG
TTTTGGCAAA ACTTAGTTAA ACGGTTGCGC TTTTCTGTGC AAGAAGAATA TCAACAACTT
GCGAACCAGT TAGCCCATCG TCCCACCGCC AGCGAGTTTT ACCATCACGG GGTTGAGATG
AATAAAGTGC GTCAACAAGC ACAAAGCTGG TTCCACCTCG TGGCCAGCCA AGAGGCTGAG
CCGTGCTTCA CGGATATGGT GACGCGTTAT GGTGATTTTT TGCTGCATGG AGTTGAAACC
ACCACCATGA CAAAATCCTT CAAAGCCATT TTGCTCGAAG CCCTGCTCGA ACTCGATGGT
TTACGCAATC CGCCCACGCT TGCGGCACTT GCTGAACGTA GTCATGCTGT ATTTTGTCGC
AGACCCGATT TAATGGCGCA GGAATTAACG CAGGCCGCCA AGCAATTTAA GGCTCAGGAT
AAAGGCTGGT TAACTTATTG GAAAAACAAC CCAATTAACG CTTTTACAAA GGCCAATAGT
AAAACACCGC CGTGGTTTCA AATAGACGCT AAGCAGCGTT TTGTGGCTAC ATTTACGATA
GATGAAGCGG ATATCGAACT GCTGCATGAC TGGGTACAAG AGCTAGTCGA TTTGCGTTTA
GCACAATATG TGCAACGCCC GCAGCAAAAA GCCACGGTGA ACACGAGCAA TGCCAGCACT
AACAACACCA GAAATACCAA CACGACAGCA AAACCACTGG CGCAGGTGTT GCCTTTTGAG
TCAACGCCAT CAACAGAAGG AACATTGTTG CCCTTCTATC CTGAACTGAA AATCGCCTGT
GGCCACTTTA AGCACGGTTC AGCACAAAAT GCTGAGCACT ATTGCGTCCC TTCTGGCTAC
GGTTTGCTTG ATCCGAAACG GCACTTTGTT GCCCCCGCGT CTGGCAATTC GATGAATGGG
GGTAAAAATC CAATTCAAGA TGGCGATTTA TTGCTGCTGG AATGGGTCAC GCCAGAGAGC
GCAGGGTCTA TCTCTAACTT GACCATGGCA ATCGAAACCC AAGACGATAC GGGTGATAAC
CAGTATTTGC TCCGCGTTGT TAGAAAAACA GCGCCGAATC AATATGAGTT GCACGCCCAA
AATCCAGCCT ATCAAACGAT GTTAGCCACG GACTCAATGA AAACCTTTGC GCGCTTAAAA
GCCGTTCTAG AAAGCCAAGA TTAG
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| Protein sequence | MIEQQTSLYS GKKLSYGGAN DPLLPRLIQA INHASEIEIS VSFIQPSGLD LLFDPLLDAL
QSGASLKLLT SDYLCISHPV ALRRLMLLAE RGAQCKIFVC GQQSFHMKSY IFIRSEQDEI
IEGCAWIGSN NISKTALLHS HEWALRHDFE LPLTSPAALE FAHIRKQFEA IFNHTESQVL
THVWIDSYLS RYQHTKQQRG IAAVSLYEEQ EHIEPPTPNA VQMEALAALK ASREQGFTRG
LVVLATGMGK TWLAAFDTLQ TAAKKVLFVA HREEILIQAE KTFNQLVPEA KTGSYNGLNQ
DEKTDYLFAS VATLGKLQHL QRFAADHFDY IVVDEFHHAA AKSYRQLLAY FRPQFLLGLT
ATPERSDQAD ILSLCDNNLV FERNLVHGID GKLLVPFDYH GIYDQAVNYQ DIPWRNGKFD
PDALDNALAT QRRATHVLHH WQQSKQSRTL AFCVSKKHAD FMAKYFTSKG INAIAVYSDS
KVRRNQALQW LAQGSIEVIF SVDLFNEGTD LPAIDTILMI RPTESKILFL QQLGRGLRLS
HQTQKQKLVV LDFIGNHESF LNRPTTLYNL GSLREVLRNL NQVNALPKGC HVNFDLELIE
FWQNLVKRLR FSVQEEYQQL ANQLAHRPTA SEFYHHGVEM NKVRQQAQSW FHLVASQEAE
PCFTDMVTRY GDFLLHGVET TTMTKSFKAI LLEALLELDG LRNPPTLAAL AERSHAVFCR
RPDLMAQELT QAAKQFKAQD KGWLTYWKNN PINAFTKANS KTPPWFQIDA KQRFVATFTI
DEADIELLHD WVQELVDLRL AQYVQRPQQK ATVNTSNAST NNTRNTNTTA KPLAQVLPFE
STPSTEGTLL PFYPELKIAC GHFKHGSAQN AEHYCVPSGY GLLDPKRHFV APASGNSMNG
GKNPIQDGDL LLLEWVTPES AGSISNLTMA IETQDDTGDN QYLLRVVRKT APNQYELHAQ
NPAYQTMLAT DSMKTFARLK AVLESQD
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