Gene SO_1378 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_1378 
Symbol 
ID1169199 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp1435565 
End bp1436125 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content49% 
IMG OID637343322 
ProductThiJ/PfpI family protein 
Protein accessionNP_716998 
Protein GI24372956 
COG category[R] General function prediction only 
COG ID[COG0693] Putative intracellular protease/amidase 
TIGRFAM ID[TIGR01382] intracellular protease, PfpI family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCAATA TTTTGATCAT CGCCGGTGAT TTTGTTGAAG ATTATGAGTT AATGGTGCCG 
TTTCAAGCCT TACAAATGGT GGGACACAGT GTCACTGTCG TTTGCCCAGA TAAAGTGGCG 
GGACAAACCA TTAAAACTGC GATCCATGAC TTTGAAGGCG ATCAAACCTA TACCGAAAAA 
CCGGGCCACT TGTTTGCGCT TAATGGCAAT TTTGCAGGCG CTAACGCGAG TGATTTTGAT 
GCACTGCTGC TTCCCGGTGG TAGGGCGCCT GAGTATTTAC GCCTAAATCC TGCCGTGATT 
GCCCTTGTTG CAGATTTTTC GGCGCAGGAT AAACCGATTG CGGCTATTTG CCATGGAGCA 
CAGTTACTGA CGGCGGCCGA TGTGGTTCGC GGTAAAAAAG TATCAGCTTA TCCTGCTTGT 
GCACCTGAAG TGAAACAAGC TGGCGCCGAA TATTGTGATA TTGAAGTCAC GGCGGCGATT 
ACCGATGGCA AATTAGTTAC CGCGCCCGCA TGGCCTGCGC ATCCCGCATG GTTGGCGCAG 
TTTAACAAGT TATTGAATTA A
 
Protein sequence
MANILIIAGD FVEDYELMVP FQALQMVGHS VTVVCPDKVA GQTIKTAIHD FEGDQTYTEK 
PGHLFALNGN FAGANASDFD ALLLPGGRAP EYLRLNPAVI ALVADFSAQD KPIAAICHGA 
QLLTAADVVR GKKVSAYPAC APEVKQAGAE YCDIEVTAAI TDGKLVTAPA WPAHPAWLAQ 
FNKLLN